Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S8C entry

There is 1 chain in PDB entry 3S8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 74GLN 746
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3S8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 89Right-handed alpha
Helix 2
2
A
93 104Right-handed alpha
Helix 3
3
A
117 126Right-handed alpha
Helix 4
4
A
127 133Right-handed alpha
Helix 5
5
A
136 143Right-handed 310
Helix 6
6
A
144 155Right-handed alpha
Helix 7
7
A
166 180Right-handed alpha
Helix 8
8
A
182 195Right-handed alpha
Helix 9
9
A
201 208Right-handed alpha
Helix 10
10
A
227 243Right-handed alpha
Helix 11
11
A
271 286Right-handed alpha
Helix 12
12
A
307 312Right-handed alpha
Helix 13
13
A
335 344Right-handed alpha
Helix 14
14
A
358 362Right-handed 310
Helix 15
15
A
363 377Right-handed alpha
Helix 16
16
A
385 400Right-handed alpha
Helix 17
17
A
407 413Right-handed alpha
Helix 18
18
A
416 420Right-handed 310
Helix 19
19
A
466 488Right-handed alpha
Helix 20
20
A
492 503Right-handed alpha
Helix 21
21
A
511 519Right-handed alpha
Helix 22
22
A
525 555Right-handed alpha
Helix 23
23
A
570 575Right-handed alpha
Helix 24
24
A
584 596Right-handed alpha
Helix 25
25
A
610 615Right-handed alpha
Helix 26
26
A
642 651Right-handed alpha
Helix 27
27
A
656 666Right-handed alpha
Helix 28
28
A
677 684Right-handed alpha
Helix 29
29
A
691 704Right-handed alpha
Helix 30
30
A
720 735Right-handed alpha
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There are 6 sheets in PDB entry 3S8C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
162 163anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
445 449anti-parallel
Strand 3
A
506 510parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 443first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
247 251parallel
Strand 4
A
297 301parallel
Strand 5
A
328 334parallel
Strand 6
A
403 406parallel
Strand 7
A
738 740anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
381 384anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 455first strand
Strand 2
A
464 465anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 715first strand
Strand 2
A
743 744parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il