Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S8D entry

There are 2 chains in PDB entry 3S8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ILE 440
B
 MSE 1ILE 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3S8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
13 18Right-handed alpha
Helix 3
4
A
36 49Right-handed alpha
Helix 4
5
A
63 68Right-handed alpha
Helix 5
6
A
72 76Right-handed 310
Helix 6
7
A
87 99Right-handed alpha
Helix 7
8
A
112 114Right-handed 310
Helix 8
9
A
115 122Right-handed alpha
Helix 9
10
A
150 158Right-handed alpha
Helix 10
11
A
182 184Right-handed 310
Helix 11
12
A
203 215Right-handed alpha
Helix 12
13
A
228 236Right-handed alpha
Helix 13
14
A
237 241Right-handed 310
Helix 14
15
A
252 261Right-handed alpha
Helix 15
16
A
284 292Right-handed alpha
Helix 16
17
A
301 306Right-handed alpha
Helix 17
18
A
307 312Right-handed alpha
Helix 18
19
A
348 358Right-handed alpha
Helix 19
20
A
372 375Right-handed 310
Helix 20
21
A
410 420Right-handed alpha
Helix 21
23
B
2 11Right-handed alpha
Helix 22
24
B
13 18Right-handed alpha
Helix 23
26
B
36 49Right-handed alpha
Helix 24
27
B
63 68Right-handed alpha
Helix 25
28
B
72 77Right-handed 310
Helix 26
29
B
87 100Right-handed alpha
Helix 27
30
B
112 114Right-handed 310
Helix 28
31
B
115 122Right-handed alpha
Helix 29
32
B
150 158Right-handed alpha
Helix 30
33
B
182 184Right-handed 310
Helix 31
34
B
203 217Right-handed alpha
Helix 32
35
B
228 238Right-handed alpha
Helix 33
36
B
239 241Right-handed 310
Helix 34
37
B
252 261Right-handed alpha
Helix 35
38
B
284 292Right-handed alpha
Helix 36
39
B
301 306Right-handed alpha
Helix 37
40
B
307 313Right-handed alpha
Helix 38
41
B
347 358Right-handed alpha
Helix 39
42
B
410 420Right-handed alpha
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There are 14 sheets in PDB entry 3S8D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
79 83parallel
Strand 3
A
55 59parallel
Strand 4
A
128 133parallel
Strand 5
A
160 165parallel
Strand 6
A
186 189parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
178 180anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
317 322parallel
Strand 3
A
362 366parallel
Strand 4
A
396 399parallel
Strand 5
A
402 405anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
280 281parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
297 299parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
332 333anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
376 377anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
79 83parallel
Strand 3
B
55 59parallel
Strand 4
B
128 133parallel
Strand 5
B
160 165parallel
Strand 6
B
186 189parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
178 180anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
222 225parallel
Strand 3
B
317 322parallel
Strand 4
B
362 366parallel
Strand 5
B
396 399parallel
Strand 6
B
402 405anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
280 281parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
297 299parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
325 327anti-parallel
Strand 3
B
379 380parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 371first strand
Strand 2
B
376 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il