Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S8E entry

There are 6 chains in PDB entry 3S8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 30SER 292
B
 MET 30LYS 291
C
 MET 30SER 292
D
 GLU 29LYS 291
E
 MET 30SER 292
F
 MET 30TYR 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 3S8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
66 81Right-handed alpha
Helix 3
3
A
92 106Right-handed alpha
Helix 4
4
A
136 141Right-handed alpha
Helix 5
5
A
142 144Right-handed 310
Helix 6
6
A
148 152Right-handed 310
Helix 7
7
A
226 240Right-handed alpha
Helix 8
8
A
244 259Right-handed alpha
Helix 9
9
B
56 60Right-handed 310
Helix 10
10
B
66 81Right-handed alpha
Helix 11
11
B
92 106Right-handed alpha
Helix 12
12
B
136 141Right-handed alpha
Helix 13
13
B
142 144Right-handed 310
Helix 14
14
B
148 152Right-handed 310
Helix 15
15
B
226 240Right-handed alpha
Helix 16
16
B
244 259Right-handed alpha
Helix 17
17
C
56 60Right-handed 310
Helix 18
18
C
66 81Right-handed alpha
Helix 19
19
C
92 106Right-handed alpha
Helix 20
20
C
136 142Right-handed alpha
Helix 21
21
C
148 152Right-handed 310
Helix 22
22
C
226 240Right-handed alpha
Helix 23
23
C
244 259Right-handed alpha
Helix 24
24
D
56 60Right-handed 310
Helix 25
25
D
66 81Right-handed alpha
Helix 26
26
D
92 106Right-handed alpha
Helix 27
27
D
136 141Right-handed alpha
Helix 28
28
D
142 144Right-handed 310
Helix 29
29
D
148 152Right-handed 310
Helix 30
30
D
226 240Right-handed alpha
Helix 31
31
D
244 259Right-handed alpha
Helix 32
32
E
56 60Right-handed 310
Helix 33
33
E
66 81Right-handed alpha
Helix 34
34
E
92 106Right-handed alpha
Helix 35
35
E
136 141Right-handed alpha
Helix 36
36
E
142 144Right-handed 310
Helix 37
37
E
148 152Right-handed 310
Helix 38
38
E
226 240Right-handed alpha
Helix 39
39
E
244 259Right-handed alpha
Helix 40
40
F
56 60Right-handed 310
Helix 41
41
F
66 81Right-handed alpha
Helix 42
42
F
92 106Right-handed alpha
Helix 43
43
F
136 141Right-handed alpha
Helix 44
44
F
142 144Right-handed 310
Helix 45
45
F
148 152Right-handed 310
Helix 46
46
F
226 240Right-handed alpha
Helix 47
47
F
244 259Right-handed alpha
Helix 48
48
G
56 60Right-handed 310
Helix 49
49
G
66 81Right-handed alpha
Helix 50
50
G
92 106Right-handed alpha
Helix 51
51
G
136 141Right-handed alpha
Helix 52
52
G
142 144Right-handed 310
Helix 53
53
G
148 152Right-handed 310
Helix 54
54
G
226 240Right-handed alpha
Helix 55
55
G
244 259Right-handed alpha
Helix 56
56
H
56 60Right-handed 310
Helix 57
57
H
66 81Right-handed alpha
Helix 58
58
H
92 106Right-handed alpha
Helix 59
59
H
136 141Right-handed alpha
Helix 60
60
H
142 144Right-handed 310
Helix 61
61
H
148 152Right-handed 310
Helix 62
62
H
226 240Right-handed alpha
Helix 63
63
H
244 259Right-handed alpha
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There are 14 sheets in PDB entry 3S8E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
46 51parallel
Strand 3
A
114 119parallel
Strand 4
A
156 161parallel
Strand 5
A
206 210parallel
Strand 6
A
277 280anti-parallel
Strand 7
B
277 280anti-parallel
Strand 8
B
206 210anti-parallel
Strand 9
B
156 161parallel
Strand 10
B
114 119parallel
Strand 11
B
46 51parallel
Strand 12
B
84 89parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
133 135anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
B
197 199anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
133 135anti-parallel
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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 89first strand
Strand 2
C
46 51parallel
Strand 3
C
114 119parallel
Strand 4
C
156 161parallel
Strand 5
C
206 210parallel
Strand 6
C
277 280anti-parallel
Strand 7
D
277 280anti-parallel
Strand 8
D
206 210anti-parallel
Strand 9
D
156 161parallel
Strand 10
D
114 119parallel
Strand 11
D
46 51parallel
Strand 12
D
84 89parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 128first strand
Strand 2
C
133 135anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 128first strand
Strand 2
D
133 135anti-parallel
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There are 12 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
84 89first strand
Strand 2
E
46 51parallel
Strand 3
E
114 119parallel
Strand 4
E
156 161parallel
Strand 5
E
206 211parallel
Strand 6
E
277 280anti-parallel
Strand 7
F
277 280anti-parallel
Strand 8
F
206 211anti-parallel
Strand 9
F
156 161parallel
Strand 10
F
114 119parallel
Strand 11
F
46 51parallel
Strand 12
F
84 89parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
126 128first strand
Strand 2
E
133 135anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
198 199first strand
Strand 2
F
197 198anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
126 128first strand
Strand 2
F
133 135anti-parallel
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There are 12 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
84 89first strand
Strand 2
G
46 51parallel
Strand 3
G
114 119parallel
Strand 4
G
156 161parallel
Strand 5
G
206 210parallel
Strand 6
G
277 280anti-parallel
Strand 7
H
277 280anti-parallel
Strand 8
H
206 210anti-parallel
Strand 9
H
156 161parallel
Strand 10
H
114 119parallel
Strand 11
H
46 51parallel
Strand 12
H
84 89parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
126 128first strand
Strand 2
G
133 135anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 128first strand
Strand 2
H
133 135anti-parallel
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