Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S8M entry

There is 1 chain in PDB entry 3S8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 12LEU 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3S8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 34Right-handed alpha
Helix 2
2
A
51 66Right-handed alpha
Helix 3
3
A
85 101Right-handed alpha
Helix 4
4
A
114 129Right-handed alpha
Helix 5
5
A
186 198Right-handed alpha
Helix 6
6
A
199 212Right-handed alpha
Helix 7
7
A
229 231Right-handed 310
Helix 8
8
A
232 237Right-handed alpha
Helix 9
9
A
238 261Right-handed alpha
Helix 10
10
A
278 282Right-handed 310
Helix 11
11
A
283 299Right-handed alpha
Helix 12
12
A
304 316Right-handed alpha
Helix 13
13
A
341 352Right-handed alpha
Helix 14
14
A
353 355Right-handed 310
Helix 15
15
A
356 358Right-handed 310
Helix 16
16
A
359 364Right-handed alpha
Helix 17
17
A
365 377Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3S8M. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
265 271parallel
Strand 3
A
215 226parallel
Strand 4
A
133 138parallel
Strand 5
A
43 47parallel
Strand 6
A
68 73parallel
Strand 7
A
105 109parallel
Strand 8
A
398 400parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
153 155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
177 182anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il