Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3S8R entry

There are 2 chains in PDB entry 3S8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 6	PHE 689
B	PRO 6	GLY 597

There are 56 helices in PDB entry 3S8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	34	62	Right-handed alpha
Helix 2	2	A	64	70	Right-handed alpha
Helix 3	3	A	73	83	Right-handed alpha
Helix 4	4	A	84	95	Right-handed alpha
Helix 5	5	A	97	118	Right-handed alpha
Helix 6	6	A	119	122	Right-handed 310
Helix 7	7	A	123	130	Right-handed 310
Helix 8	8	A	133	148	Right-handed alpha
Helix 9	9	A	152	157	Right-handed alpha
Helix 10	10	A	162	167	Right-handed alpha
Helix 11	11	A	177	180	Right-handed 310
Helix 12	12	A	197	200	Right-handed 310
Helix 13	13	A	317	327	Right-handed alpha
Helix 14	14	A	330	339	Right-handed alpha
Helix 15	15	A	372	378	Right-handed alpha
Helix 16	16	A	384	388	Right-handed 310
Helix 17	17	A	394	398	Right-handed 310
Helix 18	18	A	426	430	Right-handed 310
Helix 19	19	A	441	453	Right-handed alpha
Helix 20	20	A	458	467	Right-handed alpha
Helix 21	21	A	471	488	Right-handed alpha
Helix 22	22	A	490	503	Right-handed alpha
Helix 23	23	A	513	526	Right-handed alpha
Helix 24	24	A	553	573	Right-handed alpha
Helix 25	25	A	578	583	Right-handed alpha
Helix 26	26	A	598	602	Right-handed 310
Helix 27	27	A	658	664	Right-handed alpha
Helix 28	28	A	673	680	Right-handed alpha
Helix 29	29	B	34	62	Right-handed alpha
Helix 30	30	B	64	70	Right-handed alpha
Helix 31	31	B	73	83	Right-handed alpha
Helix 32	32	B	84	95	Right-handed alpha
Helix 33	33	B	97	118	Right-handed alpha
Helix 34	34	B	119	122	Right-handed 310
Helix 35	35	B	123	130	Right-handed 310
Helix 36	36	B	133	148	Right-handed alpha
Helix 37	37	B	152	157	Right-handed alpha
Helix 38	38	B	162	167	Right-handed alpha
Helix 39	39	B	177	180	Right-handed 310
Helix 40	40	B	197	200	Right-handed 310
Helix 41	41	B	317	327	Right-handed alpha
Helix 42	42	B	330	339	Right-handed alpha
Helix 43	43	B	372	378	Right-handed alpha
Helix 44	44	B	384	388	Right-handed 310
Helix 45	45	B	394	398	Right-handed 310
Helix 46	46	B	426	430	Right-handed 310
Helix 47	47	B	441	453	Right-handed alpha
Helix 48	48	B	458	467	Right-handed alpha
Helix 49	49	B	471	487	Right-handed alpha
Helix 50	50	B	490	503	Right-handed alpha
Helix 51	51	B	513	525	Right-handed alpha
Helix 52	52	B	553	573	Right-handed alpha
Helix 53	53	B	578	583	Right-handed alpha
Helix 54	54	B	598	602	Right-handed 310
Helix 55	55	B	658	664	Right-handed alpha
Helix 56	56	B	673	680	Right-handed alpha

There are 18 sheets in PDB entry 3S8R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	213	219	anti-parallel
Strand 3	A	202	208	anti-parallel
Strand 4	A	28	31	parallel
Strand 5	A	19	23	anti-parallel
Strand 6	A	681	686	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	411	first strand
Strand 2	A	169	175	anti-parallel
Strand 3	A	186	194	anti-parallel
Strand 4	A	620	624	anti-parallel
Strand 5	A	607	609	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	411	first strand
Strand 2	A	169	175	anti-parallel
Strand 3	A	186	194	anti-parallel
Strand 4	A	626	631	anti-parallel
Strand 5	A	637	642	anti-parallel
Strand 6	A	668	669	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	238	first strand
Strand 2	A	347	352	anti-parallel
Strand 3	A	357	361	anti-parallel
Strand 4	A	400	402	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	305	310	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	380	381	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	256	259	anti-parallel
Strand 3	A	262	264	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	276	first strand
Strand 2	A	282	288	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	537	first strand
Strand 2	A	549	551	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	587	first strand
Strand 2	A	590	593	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	213	219	anti-parallel
Strand 3	B	202	208	anti-parallel
Strand 4	B	28	31	parallel
Strand 5	B	19	23	anti-parallel
Strand 6	B	681	686	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	410	first strand
Strand 2	B	169	175	anti-parallel
Strand 3	B	186	194	anti-parallel
Strand 4	B	620	624	anti-parallel
Strand 5	B	607	609	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	410	first strand
Strand 2	B	169	175	anti-parallel
Strand 3	B	186	194	anti-parallel
Strand 4	B	626	631	anti-parallel
Strand 5	B	637	642	anti-parallel
Strand 6	B	668	669	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	238	first strand
Strand 2	B	347	352	anti-parallel
Strand 3	B	357	361	anti-parallel
Strand 4	B	400	402	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	305	310	anti-parallel
Strand 3	B	245	249	anti-parallel
Strand 4	B	380	381	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	256	259	anti-parallel
Strand 3	B	262	264	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	276	first strand
Strand 2	B	282	288	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	537	first strand
Strand 2	B	549	551	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	587	first strand
Strand 2	B	590	593	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3S8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8R