Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S8W entry

There are 3 chains in PDB entry 3S8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 106PRO 205
B
 PHE 107PRO 205
C
 SER 106PRO 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3S8W

There are 5 sheets in PDB entry 3S8W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
166 170anti-parallel
Strand 4
C
157 158parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
178 185anti-parallel
Strand 4
A
199 202anti-parallel
Strand 5
B
198 202parallel
Strand 6
B
178 186anti-parallel
Strand 7
B
140 147anti-parallel
Strand 8
B
150 154anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
121 126anti-parallel
Strand 3
B
166 170anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 116first strand
Strand 2
C
121 127anti-parallel
Strand 3
C
164 170anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 154first strand
Strand 2
C
140 147anti-parallel
Strand 3
C
178 186anti-parallel
Strand 4
C
199 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il