Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S8Y entry

There is 1 chain in PDB entry 3S8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3S8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 42Right-handed 310
Helix 2
2
A
60 66Right-handed alpha
Helix 3
3
A
68 76Right-handed alpha
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
119 126Right-handed alpha
Helix 6
6
A
126 136Right-handed alpha
Helix 7
7
A
148 161Right-handed alpha
Helix 8
8
A
176 179Right-handed 310
Helix 9
9
A
180 192Right-handed alpha
Helix 10
10
A
194 201Right-handed 310
Helix 11
11
A
202 210Right-handed alpha
Helix 12
12
A
232 242Right-handed alpha
Helix 13
13
A
258 278Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3S8Y.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 11first strand
Strand 2
A
14 23anti-parallel
Strand 3
A
28 36anti-parallel
Strand 4
A
78 82anti-parallel
Strand 5
A
46 52parallel
Strand 6
A
138 147parallel
Strand 7
A
168 171parallel
Strand 8
A
216 221parallel
Strand 9
A
247 252parallel
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