Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S8Z entry

There is 1 chain in PDB entry 3S8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 629CYS 1243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3S8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
883 888Right-handed 310
Helix 2
2
A
895 900Right-handed 310
Helix 3
3
A
1198 1203Right-handed alpha
Helix 4
4
A
1205 1214Right-handed 310
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There are 15 sheets in PDB entry 3S8Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 655first strand
Strand 2
A
641 646anti-parallel
Strand 3
A
633 638anti-parallel
Strand 4
A
879 882anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 670first strand
Strand 2
A
675 680anti-parallel
Strand 3
A
685 690anti-parallel
Strand 4
A
697 700anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 713first strand
Strand 2
A
718 723anti-parallel
Strand 3
A
728 733anti-parallel
Strand 4
A
740 743anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 756first strand
Strand 2
A
761 766anti-parallel
Strand 3
A
772 777anti-parallel
Strand 4
A
784 787anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 799first strand
Strand 2
A
804 809anti-parallel
Strand 3
A
814 819anti-parallel
Strand 4
A
826 829anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
835 840first strand
Strand 2
A
844 849anti-parallel
Strand 3
A
854 859anti-parallel
Strand 4
A
867 870anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
903 906first strand
Strand 2
A
912 915anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 922first strand
Strand 2
A
929 930anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
957 958first strand
Strand 2
A
944 947anti-parallel
Strand 3
A
935 940anti-parallel
Strand 4
A
1188 1194anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
967 973first strand
Strand 2
A
978 983anti-parallel
Strand 3
A
988 993anti-parallel
Strand 4
A
1000 1003anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1016 1022first strand
Strand 2
A
1027 1032anti-parallel
Strand 3
A
1037 1042anti-parallel
Strand 4
A
1047 1053anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1059 1065first strand
Strand 2
A
1070 1076anti-parallel
Strand 3
A
1081 1087anti-parallel
Strand 4
A
1094 1097anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1104 1110first strand
Strand 2
A
1115 1120anti-parallel
Strand 3
A
1125 1130anti-parallel
Strand 4
A
1137 1140anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1147 1152first strand
Strand 2
A
1156 1161anti-parallel
Strand 3
A
1166 1171anti-parallel
Strand 4
A
1179 1182anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1217 1221first strand
Strand 2
A
1225 1229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il