Analysis of interatomic Contacts of Structural Units in PDB entry:
3S96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3S96 entry

There are 4 chains in PDB entry 3S96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	ASP 220
B	GLN 241	GLU 458
C	GLN 1	ASP 220
D	LEU 242	GLU 458

There are 20 helices in PDB entry 3S96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	28	32	Right-handed 310
Helix 2	2	A	62	65	Right-handed 310
Helix 3	3	A	74	76	Right-handed 310
Helix 4	4	A	87	91	Right-handed 310
Helix 5	5	A	162	164	Right-handed 310
Helix 6	6	A	206	209	Right-handed 310
Helix 7	7	B	266	269	Right-handed 310
Helix 8	8	B	323	327	Right-handed 310
Helix 9	9	B	370	376	Right-handed alpha
Helix 10	10	B	430	435	Right-handed alpha
Helix 11	11	C	28	32	Right-handed 310
Helix 12	12	C	62	65	Right-handed 310
Helix 13	13	C	74	76	Right-handed 310
Helix 14	14	C	87	91	Right-handed 310
Helix 15	15	C	162	164	Right-handed 310
Helix 16	16	C	206	209	Right-handed 310
Helix 17	17	D	266	269	Right-handed 310
Helix 18	18	D	323	327	Right-handed 310
Helix 19	19	D	370	376	Right-handed alpha
Helix 20	20	D	430	435	Right-handed alpha

There are 22 sheets in PDB entry 3S96. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	108	109	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	180	190	anti-parallel
Strand 4	A	169	171	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	180	190	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	210	215	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	258	264	anti-parallel
Strand 3	B	314	319	anti-parallel
Strand 4	B	306	311	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	253	first strand
Strand 2	B	350	355	parallel
Strand 3	B	328	338	anti-parallel
Strand 4	B	273	278	anti-parallel
Strand 5	B	285	290	anti-parallel
Strand 6	B	296	298	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	253	first strand
Strand 2	B	350	355	parallel
Strand 3	B	328	338	anti-parallel
Strand 4	B	341	346	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	367	first strand
Strand 2	B	378	388	anti-parallel
Strand 3	B	420	429	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	394	399	anti-parallel
Strand 3	B	439	445	anti-parallel
Strand 4	B	448	454	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	108	109	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	142	151	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	169	171	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	142	151	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	175	177	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	210	215	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	245	first strand
Strand 2	D	258	264	anti-parallel
Strand 3	D	314	319	anti-parallel
Strand 4	D	306	311	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	253	first strand
Strand 2	D	350	355	parallel
Strand 3	D	328	338	anti-parallel
Strand 4	D	273	278	anti-parallel
Strand 5	D	285	290	anti-parallel
Strand 6	D	296	298	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	253	first strand
Strand 2	D	350	355	parallel
Strand 3	D	328	338	anti-parallel
Strand 4	D	341	346	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	367	first strand
Strand 2	D	378	388	anti-parallel
Strand 3	D	420	429	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	403	first strand
Strand 2	D	394	399	anti-parallel
Strand 3	D	439	445	anti-parallel
Strand 4	D	448	454	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3S96

Analysis of interatomic Contacts of Structural Units in PDB entry:
3S96