Analysis of interatomic Contacts of Structural Units in PDB entry:
3SBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SBF entry

There are 4 chains in PDB entry 3SBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5PRO 401
B
 LYS 4PRO 401
C
 GLU 5PRO 401
D
 LEU 3PRO 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 3SBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 56Right-handed alpha
Helix 2
2
A
56 62Right-handed alpha
Helix 3
3
A
68 79Right-handed alpha
Helix 4
4
A
85 108Right-handed alpha
Helix 5
5
A
110 116Right-handed alpha
Helix 6
6
A
133 147Right-handed alpha
Helix 7
7
A
162 166Right-handed 310
Helix 8
8
A
179 199Right-handed alpha
Helix 9
9
A
213 225Right-handed alpha
Helix 10
10
A
226 228Right-handed 310
Helix 11
11
A
240 242Right-handed 310
Helix 12
12
A
243 249Right-handed alpha
Helix 13
13
A
263 273Right-handed alpha
Helix 14
14
A
282 287Right-handed 310
Helix 15
15
A
288 303Right-handed alpha
Helix 16
16
A
315 329Right-handed alpha
Helix 17
17
A
341 348Right-handed alpha
Helix 18
18
A
372 378Right-handed alpha
Helix 19
19
A
386 389Right-handed 310
Helix 20
20
B
45 56Right-handed alpha
Helix 21
21
B
56 62Right-handed alpha
Helix 22
22
B
68 79Right-handed alpha
Helix 23
23
B
85 108Right-handed alpha
Helix 24
24
B
110 116Right-handed alpha
Helix 25
25
B
133 147Right-handed alpha
Helix 26
26
B
179 199Right-handed alpha
Helix 27
27
B
213 225Right-handed alpha
Helix 28
28
B
226 228Right-handed 310
Helix 29
29
B
240 242Right-handed 310
Helix 30
30
B
243 251Right-handed alpha
Helix 31
31
B
263 266Right-handed 310
Helix 32
32
B
267 273Right-handed alpha
Helix 33
33
B
282 287Right-handed 310
Helix 34
34
B
288 303Right-handed alpha
Helix 35
35
B
315 329Right-handed alpha
Helix 36
36
B
341 348Right-handed alpha
Helix 37
37
B
372 377Right-handed alpha
Helix 38
38
B
386 389Right-handed 310
Helix 39
39
C
45 56Right-handed alpha
Helix 40
40
C
56 62Right-handed alpha
Helix 41
41
C
68 79Right-handed alpha
Helix 42
42
C
85 108Right-handed alpha
Helix 43
43
C
110 115Right-handed alpha
Helix 44
44
C
133 147Right-handed alpha
Helix 45
45
C
162 166Right-handed 310
Helix 46
46
C
179 199Right-handed alpha
Helix 47
47
C
213 225Right-handed alpha
Helix 48
48
C
226 228Right-handed 310
Helix 49
49
C
237 242Right-handed 310
Helix 50
50
C
243 249Right-handed alpha
Helix 51
51
C
263 266Right-handed 310
Helix 52
52
C
267 273Right-handed alpha
Helix 53
53
C
282 287Right-handed 310
Helix 54
54
C
288 303Right-handed alpha
Helix 55
55
C
315 329Right-handed alpha
Helix 56
56
C
341 348Right-handed alpha
Helix 57
57
C
372 377Right-handed alpha
Helix 58
58
C
386 389Right-handed 310
Helix 59
59
D
45 56Right-handed alpha
Helix 60
60
D
56 62Right-handed alpha
Helix 61
61
D
68 79Right-handed alpha
Helix 62
62
D
85 108Right-handed alpha
Helix 63
63
D
110 116Right-handed alpha
Helix 64
64
D
133 147Right-handed alpha
Helix 65
65
D
162 166Right-handed 310
Helix 66
66
D
179 199Right-handed alpha
Helix 67
67
D
213 225Right-handed alpha
Helix 68
68
D
226 228Right-handed 310
Helix 69
69
D
240 242Right-handed 310
Helix 70
70
D
243 249Right-handed alpha
Helix 71
71
D
263 273Right-handed alpha
Helix 72
72
D
282 286Right-handed 310
Helix 73
73
D
288 303Right-handed alpha
Helix 74
74
D
315 329Right-handed alpha
Helix 75
75
D
341 348Right-handed alpha
Helix 76
76
D
372 377Right-handed alpha
Helix 77
77
D
386 389Right-handed 310
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There are 16 sheets in PDB entry 3SBF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 16first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
35 39anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
278 279parallel
Strand 3
A
255 257parallel
Strand 4
A
232 233parallel
Strand 5
A
203 207parallel
Strand 6
A
151 156parallel
Strand 7
A
123 131parallel
Strand 8
A
335 336parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
278 279parallel
Strand 3
A
255 257parallel
Strand 4
A
232 233parallel
Strand 5
A
203 207parallel
Strand 6
A
151 156parallel
Strand 7
A
123 131parallel
Strand 8
A
358 359anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
391 392parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 16first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
36 39anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
278 279parallel
Strand 3
B
255 257parallel
Strand 4
B
231 233parallel
Strand 5
B
203 207parallel
Strand 6
B
151 156parallel
Strand 7
B
123 131parallel
Strand 8
B
335 336parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
278 279parallel
Strand 3
B
255 257parallel
Strand 4
B
231 233parallel
Strand 5
B
203 207parallel
Strand 6
B
151 156parallel
Strand 7
B
123 131parallel
Strand 8
B
358 359anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
391 392parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 16first strand
Strand 2
C
23 30anti-parallel
Strand 3
C
35 39anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
305 306first strand
Strand 2
C
278 279parallel
Strand 3
C
255 257parallel
Strand 4
C
232 233parallel
Strand 5
C
203 207parallel
Strand 6
C
151 156parallel
Strand 7
C
123 131parallel
Strand 8
C
335 336parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
305 306first strand
Strand 2
C
278 279parallel
Strand 3
C
255 257parallel
Strand 4
C
232 233parallel
Strand 5
C
203 207parallel
Strand 6
C
151 156parallel
Strand 7
C
123 131parallel
Strand 8
C
358 359anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 177first strand
Strand 2
C
391 392parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 16first strand
Strand 2
D
23 30anti-parallel
Strand 3
D
36 39anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
305 306first strand
Strand 2
D
278 279parallel
Strand 3
D
255 257parallel
Strand 4
D
232 233parallel
Strand 5
D
203 207parallel
Strand 6
D
151 156parallel
Strand 7
D
123 131parallel
Strand 8
D
335 336parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
305 306first strand
Strand 2
D
278 279parallel
Strand 3
D
255 257parallel
Strand 4
D
232 233parallel
Strand 5
D
203 207parallel
Strand 6
D
151 156parallel
Strand 7
D
123 131parallel
Strand 8
D
358 359anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 177first strand
Strand 2
D
391 392parallel
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