Analysis of interatomic Contacts of Structural Units in PDB entry:
3SBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SBG entry

There is 1 chain in PDB entry 3SBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1833VAL 2390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3SBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1838 1845Right-handed 310
Helix 2
2
A
1895 1900Right-handed 310
Helix 3
3
A
1904 1924Right-handed alpha
Helix 4
4
A
1937 1939Right-handed 310
Helix 5
5
A
1940 1948Right-handed alpha
Helix 6
6
A
1963 1970Right-handed 310
Helix 7
7
A
1971 1981Right-handed alpha
Helix 8
8
A
1994 1998Right-handed 310
Helix 9
9
A
2000 2018Right-handed alpha
Helix 10
10
A
2018 2027Right-handed alpha
Helix 11
11
A
2044 2062Right-handed alpha
Helix 12
12
A
2070 2074Right-handed 310
Helix 13
13
A
2075 2085Right-handed alpha
Helix 14
14
A
2148 2160Right-handed alpha
Helix 15
15
A
2161 2167Right-handed 310
Helix 16
16
A
2187 2197Right-handed alpha
Helix 17
17
A
2270 2282Right-handed alpha
Helix 18
18
A
2308 2317Right-handed alpha
Helix 19
19
A
2330 2332Right-handed 310
Helix 20
20
A
2362 2366Right-handed 310
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There are 5 sheets in PDB entry 3SBG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1955 1957first strand
Strand 2
A
1932 1935parallel
Strand 3
A
1849 1853parallel
Strand 4
A
1877 1882anti-parallel
Strand 5
A
1888 1894anti-parallel
Strand 6
A
1985 1990anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1859 1864first strand
Strand 2
A
1870 1875anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2169 2171first strand
Strand 2
A
2299 2307parallel
Strand 3
A
2289 2296anti-parallel
Strand 4
A
2254 2262parallel
Strand 5
A
2204 2212anti-parallel
Strand 6
A
2215 2225anti-parallel
Strand 7
A
2182 2186parallel
Strand 8
A
2338 2342parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2334 2336first strand
Strand 2
A
2299 2307anti-parallel
Strand 3
A
2289 2296anti-parallel
Strand 4
A
2254 2262parallel
Strand 5
A
2204 2212anti-parallel
Strand 6
A
2215 2225anti-parallel
Strand 7
A
2348 2352parallel
Strand 8
A
2374 2376anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2229 2231first strand
Strand 2
A
2236 2238anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il