Analysis of interatomic Contacts of Structural Units in PDB entry:
3SBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SBO entry

There are 4 chains in PDB entry 3SBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ILE 447
B
 SER 6ILE 447
C
 SER 6ILE 447
D
 SER 6SER 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are109 helices in PDB entry 3SBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 15Right-handed alpha
Helix 2
2
A
21 42Right-handed alpha
Helix 3
3
A
43 47Right-handed 310
Helix 4
4
A
49 56Right-handed alpha
Helix 5
5
A
102 120Right-handed alpha
Helix 6
6
A
139 155Right-handed alpha
Helix 7
7
A
172 188Right-handed alpha
Helix 8
8
A
198 202Right-handed 310
Helix 9
9
A
207 224Right-handed alpha
Helix 10
10
A
241 254Right-handed alpha
Helix 11
11
A
275 289Right-handed alpha
Helix 12
12
A
292 301Right-handed alpha
Helix 13
13
A
328 339Right-handed alpha
Helix 14
14
A
352 362Right-handed alpha
Helix 15
15
A
368 373Right-handed alpha
Helix 16
16
A
373 389Right-handed alpha
Helix 17
17
A
394 416Right-handed alpha
Helix 18
18
A
424 444Right-handed alpha
Helix 19
19
B
6 16Right-handed alpha
Helix 20
20
B
21 42Right-handed alpha
Helix 21
21
B
46 48Right-handed 310
Helix 22
22
B
49 56Right-handed alpha
Helix 23
23
B
102 119Right-handed alpha
Helix 24
24
B
139 155Right-handed alpha
Helix 25
25
B
156 158Right-handed 310
Helix 26
26
B
172 188Right-handed alpha
Helix 27
27
B
209 227Right-handed alpha
Helix 28
28
B
241 254Right-handed alpha
Helix 29
29
B
275 287Right-handed alpha
Helix 30
30
B
292 300Right-handed alpha
Helix 31
31
B
309 313Right-handed 310
Helix 32
32
B
328 338Right-handed alpha
Helix 33
33
B
352 362Right-handed alpha
Helix 34
34
B
368 373Right-handed alpha
Helix 35
35
B
373 390Right-handed alpha
Helix 36
36
B
394 415Right-handed alpha
Helix 37
37
B
424 443Right-handed alpha
Helix 38
38
C
6 15Right-handed alpha
Helix 39
39
C
21 42Right-handed alpha
Helix 40
40
C
43 48Right-handed alpha
Helix 41
41
C
49 55Right-handed alpha
Helix 42
42
C
102 119Right-handed alpha
Helix 43
43
C
139 155Right-handed alpha
Helix 44
44
C
172 188Right-handed alpha
Helix 45
45
C
206 226Right-handed alpha
Helix 46
46
C
241 254Right-handed alpha
Helix 47
47
C
277 287Right-handed alpha
Helix 48
48
C
292 300Right-handed alpha
Helix 49
49
C
328 339Right-handed alpha
Helix 50
50
C
352 362Right-handed alpha
Helix 51
51
C
368 373Right-handed alpha
Helix 52
52
C
374 389Right-handed alpha
Helix 53
53
C
394 418Right-handed alpha
Helix 54
54
C
424 443Right-handed alpha
Helix 55
55
D
6 15Right-handed alpha
Helix 56
56
D
21 42Right-handed alpha
Helix 57
57
D
43 47Right-handed 310
Helix 58
58
D
49 56Right-handed alpha
Helix 59
59
D
102 119Right-handed alpha
Helix 60
60
D
139 155Right-handed alpha
Helix 61
61
D
156 158Right-handed 310
Helix 62
62
D
172 188Right-handed alpha
Helix 63
63
D
206 226Right-handed alpha
Helix 64
64
D
241 254Right-handed alpha
Helix 65
65
D
275 288Right-handed alpha
Helix 66
66
D
292 300Right-handed alpha
Helix 67
67
D
309 313Right-handed 310
Helix 68
68
D
328 339Right-handed alpha
Helix 69
69
D
352 362Right-handed alpha
Helix 70
70
D
368 373Right-handed alpha
Helix 71
71
D
373 389Right-handed alpha
Helix 72
72
D
394 416Right-handed alpha
Helix 73
73
D
424 444Right-handed alpha
Helix 74
74
E
6 18Right-handed alpha
Helix 75
75
E
21 42Right-handed alpha
Helix 76
76
E
43 46Right-handed 310
Helix 77
77
E
49 56Right-handed alpha
Helix 78
78
E
102 119Right-handed alpha
Helix 79
79
E
139 155Right-handed alpha
Helix 80
80
E
172 188Right-handed alpha
Helix 81
81
E
208 225Right-handed alpha
Helix 82
82
E
241 254Right-handed alpha
Helix 83
83
E
275 284Right-handed alpha
Helix 84
84
E
293 300Right-handed alpha
Helix 85
85
E
309 313Right-handed 310
Helix 86
86
E
328 339Right-handed alpha
Helix 87
87
E
352 361Right-handed alpha
Helix 88
88
E
368 373Right-handed alpha
Helix 89
89
E
374 389Right-handed alpha
Helix 90
90
E
394 415Right-handed alpha
Helix 91
91
E
424 444Right-handed alpha
Helix 92
92
F
8 16Right-handed alpha
Helix 93
93
F
22 42Right-handed alpha
Helix 94
94
F
42 47Right-handed alpha
Helix 95
95
F
49 55Right-handed alpha
Helix 96
96
F
102 119Right-handed alpha
Helix 97
97
F
139 155Right-handed alpha
Helix 98
98
F
156 158Right-handed 310
Helix 99
99
F
172 188Right-handed alpha
Helix 100
100
F
206 227Right-handed alpha
Helix 101
101
F
243 254Right-handed alpha
Helix 102
102
F
275 289Right-handed alpha
Helix 103
103
F
292 301Right-handed alpha
Helix 104
104
F
328 339Right-handed alpha
Helix 105
105
F
352 362Right-handed alpha
Helix 106
106
F
368 373Right-handed alpha
Helix 107
107
F
374 389Right-handed alpha
Helix 108
108
F
394 414Right-handed alpha
Helix 109
109
F
424 444Right-handed alpha
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There are 21 sheets in PDB entry 3SBO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 68first strand
Strand 2
A
74 85anti-parallel
Strand 3
A
126 131anti-parallel
Strand 4
A
91 97parallel
Strand 5
A
163 167parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
234 239parallel
Strand 3
A
317 321parallel
Strand 4
A
342 344parallel
Strand 5
A
365 367parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
266 269anti-parallel
Strand 3
A
304 306anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 68first strand
Strand 2
B
74 85anti-parallel
Strand 3
B
125 131anti-parallel
Strand 4
B
95 97parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 68first strand
Strand 2
B
74 85anti-parallel
Strand 3
B
125 131anti-parallel
Strand 4
B
91 93parallel
Strand 5
B
163 165parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
234 237parallel
Strand 3
B
317 319parallel
Strand 4
B
342 344parallel
Strand 5
B
365 367parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
266 269anti-parallel
Strand 3
B
303 306anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 68first strand
Strand 2
C
74 85anti-parallel
Strand 3
C
126 131anti-parallel
Strand 4
C
91 97parallel
Strand 5
C
163 167parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
303 304first strand
Strand 2
C
266 269anti-parallel
Strand 3
C
257 263anti-parallel
Strand 4
C
234 238parallel
Strand 5
C
317 320parallel
Strand 6
C
342 344parallel
Strand 7
C
365 367parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 60first strand
Strand 2
D
74 85anti-parallel
Strand 3
D
63 68anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 60first strand
Strand 2
D
74 85anti-parallel
Strand 3
D
126 131anti-parallel
Strand 4
D
91 97parallel
Strand 5
D
163 167parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
257 258first strand
Strand 2
D
234 238parallel
Strand 3
D
317 320parallel
Strand 4
D
342 344parallel
Strand 5
D
365 367parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
260 262first strand
Strand 2
D
266 269anti-parallel
Strand 3
D
303 306anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 60first strand
Strand 2
E
74 85anti-parallel
Strand 3
E
63 68anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 60first strand
Strand 2
E
74 85anti-parallel
Strand 3
E
126 131anti-parallel
Strand 4
E
95 97parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
91 92first strand
Strand 2
E
163 164parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
257 258first strand
Strand 2
E
234 237parallel
Strand 3
E
317 319parallel
Strand 4
E
342 344parallel
Strand 5
E
365 367parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
260 262first strand
Strand 2
E
266 269anti-parallel
Strand 3
E
303 306anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
63 68first strand
Strand 2
F
74 85anti-parallel
Strand 3
F
126 131anti-parallel
Strand 4
F
91 97parallel
Strand 5
F
163 167parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
260 263first strand
Strand 2
F
266 269anti-parallel
Strand 3
F
303 305anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
342 344first strand
Strand 2
F
365 367parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il