Analysis of interatomic Contacts of Structural Units in PDB entry:
3SBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SBS entry

There is 1 chain in PDB entry 3SBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3SBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
86 94Right-handed alpha
Helix 2
2
A
95 100Right-handed alpha
Helix 3
3
A
112 119Right-handed alpha
Helix 4
4
A
122 131Right-handed alpha
Helix 5
5
A
146 153Right-handed alpha
Helix 6
6
A
185 189Right-handed 310
Helix 7
7
A
193 200Right-handed alpha
Helix 8
8
A
201 207Right-handed alpha
Helix 9
9
A
216 235Right-handed alpha
Helix 10
10
A
236 252Right-handed alpha
Helix 11
11
A
257 275Right-handed alpha
Helix 12
12
A
285 295Right-handed alpha
Helix 13
13
A
298 301Right-handed 310
Helix 14
14
A
302 313Right-handed alpha
Helix 15
15
A
314 317Right-handed 310
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There are 3 sheets in PDB entry 3SBS. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
32 34anti-parallel
Strand 3
A
103 104parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
56 60anti-parallel
Strand 5
A
138 141anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
77 83anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il