Analysis of interatomic Contacts of Structural Units in PDB entry:
3SBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SBY entry

There are 2 chains in PDB entry 3SBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLN 229
B
 VAL 5ALA 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3SBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 17Right-handed alpha
Helix 2
2
A
28 33Right-handed alpha
Helix 3
3
A
34 35Right-handed 310
Helix 4
4
A
36 40Right-handed 310
Helix 5
5
A
57 62Right-handed alpha
Helix 6
6
A
77 94Right-handed alpha
Helix 7
7
A
105 107Right-handed 310
Helix 8
8
A
116 124Right-handed alpha
Helix 9
9
A
185 198Right-handed alpha
Helix 10
10
A
204 208Right-handed 310
Helix 11
11
A
216 224Right-handed alpha
Helix 12
12
B
7 17Right-handed alpha
Helix 13
13
B
28 33Right-handed alpha
Helix 14
14
B
57 62Right-handed alpha
Helix 15
15
B
62 67Right-handed alpha
Helix 16
16
B
77 92Right-handed alpha
Helix 17
17
B
105 107Right-handed 310
Helix 18
18
B
116 124Right-handed alpha
Helix 19
19
B
131 135Right-handed 310
Helix 20
20
B
185 199Right-handed alpha
Helix 21
21
B
202 208Right-handed 310
Helix 22
22
B
216 225Right-handed alpha
Helix 23
23
B
226 230Right-handed 310
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There are 4 sheets in PDB entry 3SBY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 27first strand
Strand 2
A
47 54anti-parallel
Strand 3
A
159 170anti-parallel
Strand 4
A
100 103anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
148 150anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 27first strand
Strand 2
B
47 54anti-parallel
Strand 3
B
159 170anti-parallel
Strand 4
B
100 103anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
148 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il