Analysis of interatomic Contacts of Structural Units in PDB entry:
3SC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SC6 entry

There are 5 chains in PDB entry 3SC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LYS 282
B
 SER -2THR 281
C
 MET 1THR 281
D
 ASN -1THR 281
E
 LYS 2ASP 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 3SC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 22Right-handed alpha
Helix 2
2
A
41 53Right-handed alpha
Helix 3
3
A
65 70Right-handed alpha
Helix 4
4
A
72 81Right-handed alpha
Helix 5
5
A
81 95Right-handed alpha
Helix 6
6
A
105 107Right-handed 310
Helix 7
7
A
125 142Right-handed alpha
Helix 8
8
A
160 170Right-handed alpha
Helix 9
9
A
188 200Right-handed alpha
Helix 10
10
A
217 229Right-handed alpha
Helix 11
11
A
238 243Right-handed alpha
Helix 12
12
A
256 262Right-handed alpha
Helix 13
13
A
269 281Right-handed alpha
Helix 14
14
B
12 22Right-handed alpha
Helix 15
15
B
41 53Right-handed alpha
Helix 16
16
B
65 72Right-handed alpha
Helix 17
17
B
72 81Right-handed alpha
Helix 18
18
B
81 95Right-handed alpha
Helix 19
19
B
105 107Right-handed 310
Helix 20
20
B
125 142Right-handed alpha
Helix 21
21
B
160 172Right-handed alpha
Helix 22
22
B
188 200Right-handed alpha
Helix 23
23
B
217 228Right-handed alpha
Helix 24
24
B
256 262Right-handed alpha
Helix 25
25
B
269 280Right-handed alpha
Helix 26
26
C
12 22Right-handed alpha
Helix 27
27
C
41 53Right-handed alpha
Helix 28
28
C
67 71Right-handed 310
Helix 29
29
C
72 81Right-handed alpha
Helix 30
30
C
81 95Right-handed alpha
Helix 31
31
C
105 107Right-handed 310
Helix 32
32
C
125 142Right-handed alpha
Helix 33
33
C
160 170Right-handed alpha
Helix 34
34
C
188 200Right-handed alpha
Helix 35
35
C
217 229Right-handed alpha
Helix 36
36
C
238 243Right-handed alpha
Helix 37
37
C
256 262Right-handed alpha
Helix 38
38
C
269 280Right-handed alpha
Helix 39
39
D
12 19Right-handed alpha
Helix 40
40
D
41 53Right-handed alpha
Helix 41
41
D
65 72Right-handed alpha
Helix 42
42
D
72 81Right-handed alpha
Helix 43
43
D
81 95Right-handed alpha
Helix 44
44
D
105 107Right-handed 310
Helix 45
45
D
125 142Right-handed alpha
Helix 46
46
D
160 170Right-handed alpha
Helix 47
47
D
188 199Right-handed alpha
Helix 48
48
D
217 228Right-handed alpha
Helix 49
49
D
238 243Right-handed alpha
Helix 50
50
D
256 262Right-handed alpha
Helix 51
51
D
269 280Right-handed alpha
Helix 52
52
E
12 22Right-handed alpha
Helix 53
53
E
41 53Right-handed alpha
Helix 54
54
E
65 70Right-handed alpha
Helix 55
55
E
72 81Right-handed alpha
Helix 56
56
E
81 95Right-handed alpha
Helix 57
57
E
105 107Right-handed 310
Helix 58
58
E
125 142Right-handed alpha
Helix 59
59
E
160 170Right-handed alpha
Helix 60
60
E
188 201Right-handed alpha
Helix 61
61
E
217 229Right-handed alpha
Helix 62
62
E
256 262Right-handed alpha
Helix 63
63
E
269 280Right-handed alpha
Helix 64
64
F
12 22Right-handed alpha
Helix 65
65
F
41 53Right-handed alpha
Helix 66
66
F
67 71Right-handed 310
Helix 67
67
F
72 81Right-handed alpha
Helix 68
68
F
81 95Right-handed alpha
Helix 69
69
F
125 142Right-handed alpha
Helix 70
70
F
160 172Right-handed alpha
Helix 71
71
F
188 199Right-handed alpha
Helix 72
72
F
217 228Right-handed alpha
Helix 73
73
F
238 243Right-handed alpha
Helix 74
74
F
256 262Right-handed alpha
Helix 75
75
F
269 280Right-handed alpha
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There are 24 sheets in PDB entry 3SC6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
3 8parallel
Strand 3
A
56 59parallel
Strand 4
A
97 103parallel
Strand 5
A
145 150parallel
Strand 6
A
205 208parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
186 187parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
233 237parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
215 216anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
3 8parallel
Strand 3
B
56 59parallel
Strand 4
B
97 103parallel
Strand 5
B
145 150parallel
Strand 6
B
205 208parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
186 187parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
234 237parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
182 183anti-parallel
Strand 3
B
251 252parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 31first strand
Strand 2
C
3 8parallel
Strand 3
C
56 59parallel
Strand 4
C
97 103parallel
Strand 5
C
145 150parallel
Strand 6
C
205 208parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 154first strand
Strand 2
C
186 187parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 178first strand
Strand 2
C
233 237parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 216first strand
Strand 2
C
182 183anti-parallel
Strand 3
C
251 252parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 32first strand
Strand 2
D
3 8parallel
Strand 3
D
56 59parallel
Strand 4
D
97 103parallel
Strand 5
D
145 150parallel
Strand 6
D
205 208parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 154first strand
Strand 2
D
186 187parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
174 178first strand
Strand 2
D
233 237parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
215 216first strand
Strand 2
D
182 183anti-parallel
Strand 3
D
251 252parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 32first strand
Strand 2
E
3 8parallel
Strand 3
E
56 59parallel
Strand 4
E
97 103parallel
Strand 5
E
145 150parallel
Strand 6
E
205 208parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 154first strand
Strand 2
E
186 187parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
174 178first strand
Strand 2
E
233 237parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
215 216first strand
Strand 2
E
182 183anti-parallel
Strand 3
E
251 252parallel
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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 32first strand
Strand 2
F
3 8parallel
Strand 3
F
56 59parallel
Strand 4
F
97 103parallel
Strand 5
F
145 150parallel
Strand 6
F
205 208parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
153 154first strand
Strand 2
F
186 187parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
174 178first strand
Strand 2
F
233 237parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
215 216first strand
Strand 2
F
182 183anti-parallel
Strand 3
F
251 252parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il