Analysis of interatomic Contacts of Structural Units in PDB entry:
3SD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SD7 entry

There is 1 chain in PDB entry 3SD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3SD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 34Right-handed alpha
Helix 2
2
A
39 47Right-handed 310
Helix 3
3
A
50 58Right-handed alpha
Helix 4
4
A
62 80Right-handed alpha
Helix 5
5
A
81 84Right-handed 310
Helix 6
6
A
90 101Right-handed alpha
Helix 7
7
A
113 123Right-handed alpha
Helix 8
8
A
125 129Right-handed 310
Helix 9
9
A
143 155Right-handed alpha
Helix 10
10
A
159 161Right-handed 310
Helix 11
11
A
169 180Right-handed alpha
Helix 12
12
A
192 200Right-handed alpha
Helix 13
13
A
210 216Right-handed alpha
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There are 2 sheets in PDB entry 3SD7. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
104 112parallel
Strand 3
A
7 10parallel
Strand 4
A
163 167parallel
Strand 5
A
182 186parallel
Strand 6
A
203 205parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
86 87anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il