Analysis of interatomic Contacts of Structural Units in PDB entry:
3SDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SDB entry

There is 1 chain in PDB entry 3SDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3SDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 9Right-handed 310
Helix 2
2
A
25 43Right-handed alpha
Helix 3
3
A
57 65Right-handed 310
Helix 4
4
A
66 85Right-handed alpha
Helix 5
5
A
177 181Right-handed 310
Helix 6
6
A
184 193Right-handed alpha
Helix 7
7
A
208 224Right-handed alpha
Helix 8
8
A
276 286Right-handed alpha
Helix 9
9
A
286 296Right-handed alpha
Helix 10
10
A
296 302Right-handed alpha
Helix 11
11
A
332 358Right-handed alpha
Helix 12
12
A
370 387Right-handed alpha
Helix 13
13
A
390 392Right-handed 310
Helix 14
14
A
410 420Right-handed alpha
Helix 15
15
A
428 439Right-handed alpha
Helix 16
16
A
452 474Right-handed alpha
Helix 17
17
A
482 489Right-handed alpha
Helix 18
18
A
509 524Right-handed alpha
Helix 19
19
A
527 543Right-handed alpha
Helix 20
20
A
557 562Right-handed alpha
Helix 21
21
A
563 578Right-handed alpha
Helix 22
22
A
580 593Right-handed alpha
Helix 23
23
A
605 609Right-handed 310
Helix 24
24
A
613 630Right-handed alpha
Helix 25
25
A
632 637Right-handed alpha
Helix 26
26
A
665 676Right-handed alpha
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There are 6 sheets in PDB entry 3SDB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 120first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
136 137parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 120first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
90 99anti-parallel
Strand 4
A
47 49parallel
Strand 5
A
11 18parallel
Strand 6
A
268 275anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
130 131anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 148first strand
Strand 2
A
151 154anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 259first strand
Strand 2
A
248 252anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
170 175parallel
Strand 6
A
159 163anti-parallel
Strand 7
A
304 308parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 425first strand
Strand 2
A
394 398parallel
Strand 3
A
362 366parallel
Strand 4
A
475 479parallel
Strand 5
A
502 503parallel
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