Analysis of interatomic Contacts of Structural Units in PDB entry:
3SDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SDL entry

There are 4 chains in PDB entry 3SDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7GLU 101
B
 THR 7TYR 103
C
 ASP 4LEU 154
D
 ASP 4LEU 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3SDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 37Right-handed alpha
Helix 2
2
A
41 65Right-handed alpha
Helix 3
3
A
66 71Right-handed 310
Helix 4
4
A
73 91Right-handed alpha
Helix 5
5
A
96 100Right-handed 310
Helix 6
6
B
15 36Right-handed alpha
Helix 7
7
B
41 64Right-handed alpha
Helix 8
8
B
73 91Right-handed alpha
Helix 9
9
C
24 37Right-handed alpha
Helix 10
10
C
39 41Right-handed 310
Helix 11
11
C
103 116Right-handed alpha
Helix 12
12
C
118 120Right-handed 310
Helix 13
13
C
136 141Right-handed 310
Helix 14
14
D
24 37Right-handed alpha
Helix 15
15
D
39 41Right-handed 310
Helix 16
16
D
59 63Right-handed 310
Helix 17
17
D
103 116Right-handed alpha
Helix 18
18
D
118 120Right-handed 310
Helix 19
19
D
136 141Right-handed 310
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There are 4 sheets in PDB entry 3SDL. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
5 9anti-parallel
Strand 3
C
70 75parallel
Strand 4
C
43 47anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 98first strand
Strand 2
C
82 87anti-parallel
Strand 3
C
147 152parallel
Strand 4
C
122 126anti-parallel
Strand 5
C
129 130anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 17first strand
Strand 2
D
5 9anti-parallel
Strand 3
D
70 75parallel
Strand 4
D
43 47anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 98first strand
Strand 2
D
82 87anti-parallel
Strand 3
D
147 152parallel
Strand 4
D
122 126anti-parallel
Strand 5
D
129 130anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il