Analysis of interatomic Contacts of Structural Units in PDB entry:
3SE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SE5 entry

There are 4 chains in PDB entry 3SE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13ASP 167
B
 SER 13ASP 167
C
 SER 13ASP 167
D
 SER 13ASP 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 3SE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
29 34Right-handed 310
Helix 3
3
A
38 51Right-handed alpha
Helix 4
4
A
77 86Right-handed alpha
Helix 5
5
A
92 107Right-handed alpha
Helix 6
6
A
112 130Right-handed alpha
Helix 7
7
A
135 138Right-handed 310
Helix 8
8
A
139 150Right-handed alpha
Helix 9
9
A
154 163Right-handed alpha
Helix 10
10
B
13 28Right-handed alpha
Helix 11
11
B
29 34Right-handed 310
Helix 12
12
B
38 51Right-handed alpha
Helix 13
13
B
74 76Right-handed 310
Helix 14
14
B
77 87Right-handed alpha
Helix 15
15
B
92 107Right-handed alpha
Helix 16
16
B
112 130Right-handed alpha
Helix 17
17
B
135 138Right-handed 310
Helix 18
18
B
139 150Right-handed alpha
Helix 19
19
B
154 163Right-handed alpha
Helix 20
20
C
13 28Right-handed alpha
Helix 21
21
C
29 34Right-handed 310
Helix 22
22
C
38 51Right-handed alpha
Helix 23
23
C
77 87Right-handed alpha
Helix 24
24
C
92 107Right-handed alpha
Helix 25
25
C
112 130Right-handed alpha
Helix 26
26
C
135 138Right-handed 310
Helix 27
27
C
139 150Right-handed alpha
Helix 28
28
C
154 163Right-handed alpha
Helix 29
29
D
13 28Right-handed alpha
Helix 30
30
D
29 34Right-handed 310
Helix 31
31
D
38 51Right-handed alpha
Helix 32
32
D
77 86Right-handed alpha
Helix 33
33
D
92 107Right-handed alpha
Helix 34
34
D
112 130Right-handed alpha
Helix 35
35
D
135 138Right-handed 310
Helix 36
36
D
139 150Right-handed alpha
Helix 37
37
D
154 162Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3SE5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 133first strand
Strand 2
C
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 133first strand
Strand 2
D
165 166anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il