Analysis of interatomic Contacts of Structural Units in PDB entry:
3SE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SE6 entry

There are 2 chains in PDB entry 3SE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 54ARG 961
B
 VAL 55ARG 961
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 3SE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
143 145Right-handed 310
Helix 2
2
A
203 207Right-handed 310
Helix 3
3
A
260 264Right-handed 310
Helix 4
4
A
289 295Right-handed 310
Helix 5
5
A
296 315Right-handed alpha
Helix 6
6
A
347 349Right-handed 310
Helix 7
7
A
357 373Right-handed alpha
Helix 8
8
A
374 376Right-handed 310
Helix 9
9
A
385 388Right-handed 310
Helix 10
10
A
389 408Right-handed alpha
Helix 11
11
A
409 411Right-handed 310
Helix 12
12
A
412 426Right-handed alpha
Helix 13
13
A
442 449Right-handed alpha
Helix 14
14
A
451 470Right-handed alpha
Helix 15
15
A
470 486Right-handed alpha
Helix 16
16
A
491 501Right-handed alpha
Helix 17
17
A
533 544Right-handed alpha
Helix 18
18
A
625 628Right-handed 310
Helix 19
19
A
638 651Right-handed alpha
Helix 20
20
A
652 654Right-handed 310
Helix 21
21
A
655 672Right-handed alpha
Helix 22
22
A
676 684Right-handed alpha
Helix 23
23
A
685 689Right-handed 310
Helix 24
24
A
692 713Right-handed alpha
Helix 25
25
A
715 729Right-handed alpha
Helix 26
26
A
730 737Right-handed alpha
Helix 27
27
A
744 761Right-handed alpha
Helix 28
28
A
763 780Right-handed alpha
Helix 29
29
A
787 799Right-handed alpha
Helix 30
30
A
801 815Right-handed alpha
Helix 31
31
A
817 829Right-handed alpha
Helix 32
32
A
833 847Right-handed alpha
Helix 33
33
A
851 853Right-handed 310
Helix 34
34
A
854 865Right-handed alpha
Helix 35
35
A
867 887Right-handed alpha
Helix 36
36
A
891 900Right-handed alpha
Helix 37
37
A
907 921Right-handed alpha
Helix 38
38
A
928 961Right-handed alpha
Helix 39
39
B
143 145Right-handed 310
Helix 40
40
B
203 207Right-handed 310
Helix 41
41
B
260 264Right-handed 310
Helix 42
42
B
289 295Right-handed 310
Helix 43
43
B
296 315Right-handed alpha
Helix 44
44
B
347 349Right-handed 310
Helix 45
45
B
357 375Right-handed alpha
Helix 46
46
B
385 388Right-handed 310
Helix 47
47
B
389 408Right-handed alpha
Helix 48
48
B
409 411Right-handed 310
Helix 49
49
B
412 426Right-handed alpha
Helix 50
50
B
442 449Right-handed alpha
Helix 51
51
B
451 470Right-handed alpha
Helix 52
52
B
470 486Right-handed alpha
Helix 53
53
B
491 501Right-handed alpha
Helix 54
54
B
534 544Right-handed alpha
Helix 55
55
B
625 628Right-handed 310
Helix 56
56
B
638 651Right-handed alpha
Helix 57
57
B
652 654Right-handed 310
Helix 58
58
B
655 672Right-handed alpha
Helix 59
59
B
676 684Right-handed alpha
Helix 60
60
B
685 689Right-handed 310
Helix 61
61
B
692 713Right-handed alpha
Helix 62
62
B
715 729Right-handed alpha
Helix 63
63
B
730 737Right-handed alpha
Helix 64
64
B
744 761Right-handed alpha
Helix 65
65
B
763 780Right-handed alpha
Helix 66
66
B
787 799Right-handed alpha
Helix 67
67
B
801 815Right-handed alpha
Helix 68
68
B
817 829Right-handed alpha
Helix 69
69
B
833 847Right-handed alpha
Helix 70
70
B
851 853Right-handed 310
Helix 71
71
B
854 865Right-handed alpha
Helix 72
72
B
867 887Right-handed alpha
Helix 73
73
B
891 900Right-handed alpha
Helix 74
74
B
907 921Right-handed alpha
Helix 75
75
B
928 961Right-handed alpha
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There are 14 sheets in PDB entry 3SE6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
116 124anti-parallel
Strand 3
A
162 171anti-parallel
Strand 4
A
90 101anti-parallel
Strand 5
A
73 85anti-parallel
Strand 6
A
219 226parallel
Strand 7
A
249 253anti-parallel
Strand 8
A
238 243anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
147 151anti-parallel
Strand 3
A
138 142anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 185first strand
Strand 2
A
191 198anti-parallel
Strand 3
A
266 269anti-parallel
Strand 4
A
231 234anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 277first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
322 328parallel
Strand 4
A
341 345parallel
Strand 5
A
335 336anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
488 490parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 613first strand
Strand 2
A
558 565anti-parallel
Strand 3
A
548 555anti-parallel
Strand 4
A
632 636parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 603first strand
Strand 2
A
590 594anti-parallel
Strand 3
A
621 623anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
116 124anti-parallel
Strand 3
B
162 171anti-parallel
Strand 4
B
90 101anti-parallel
Strand 5
B
73 85anti-parallel
Strand 6
B
219 226parallel
Strand 7
B
249 253anti-parallel
Strand 8
B
238 243anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
138 142anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 185first strand
Strand 2
B
191 198anti-parallel
Strand 3
B
266 269anti-parallel
Strand 4
B
231 234anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 277first strand
Strand 2
B
283 288anti-parallel
Strand 3
B
322 328parallel
Strand 4
B
341 345parallel
Strand 5
B
335 336anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
488 490parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
609 613first strand
Strand 2
B
558 565anti-parallel
Strand 3
B
548 555anti-parallel
Strand 4
B
632 636parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
601 603first strand
Strand 2
B
590 594anti-parallel
Strand 3
B
621 623anti-parallel
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