Analysis of interatomic Contacts of Structural Units in PDB entry:
3SEO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SEO entry

There are 2 chains in PDB entry 3SEO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2LEU 240
B
 GLY 1LEU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 3SEO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
9 14Right-handed alpha
Helix 3
3
A
15 17Right-handed 310
Helix 4
4
A
18 37Right-handed alpha
Helix 5
5
A
40 48Right-handed alpha
Helix 6
6
A
53 59Right-handed alpha
Helix 7
7
A
62 73Right-handed alpha
Helix 8
8
A
96 106Right-handed alpha
Helix 9
9
A
127 141Right-handed alpha
Helix 10
10
A
143 152Right-handed alpha
Helix 11
11
A
154 164Right-handed alpha
Helix 12
12
A
165 170Right-handed 310
Helix 13
13
A
171 177Right-handed alpha
Helix 14
14
A
177 191Right-handed alpha
Helix 15
15
A
197 213Right-handed alpha
Helix 16
16
A
214 217Right-handed 310
Helix 17
17
A
218 238Right-handed alpha
Helix 18
18
B
3 7Right-handed 310
Helix 19
19
B
9 14Right-handed alpha
Helix 20
20
B
15 17Right-handed 310
Helix 21
21
B
18 37Right-handed alpha
Helix 22
22
B
40 50Right-handed alpha
Helix 23
23
B
53 59Right-handed alpha
Helix 24
24
B
62 73Right-handed alpha
Helix 25
25
B
74 79Right-handed 310
Helix 26
26
B
96 108Right-handed alpha
Helix 27
27
B
127 141Right-handed alpha
Helix 28
28
B
143 152Right-handed alpha
Helix 29
29
B
154 164Right-handed alpha
Helix 30
30
B
165 170Right-handed 310
Helix 31
31
B
171 192Right-handed alpha
Helix 32
32
B
197 212Right-handed alpha
Helix 33
33
B
214 217Right-handed 310
Helix 34
34
B
218 240Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3SEO. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
125 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
122 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il