Analysis of interatomic Contacts of Structural Units in PDB entry:
3SF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SF6 entry

There is 1 chain in PDB entry 3SF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13ARG 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3SF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 21Right-handed alpha
Helix 2
2
A
22 26Right-handed 310
Helix 3
3
A
27 45Right-handed alpha
Helix 4
4
A
48 56Right-handed alpha
Helix 5
5
A
59 70Right-handed alpha
Helix 6
6
A
86 101Right-handed alpha
Helix 7
7
A
101 114Right-handed alpha
Helix 8
8
A
114 123Right-handed alpha
Helix 9
9
A
124 137Right-handed alpha
Helix 10
10
A
154 158Right-handed 310
Helix 11
11
A
181 184Right-handed 310
Helix 12
12
A
238 240Right-handed 310
Helix 13
13
A
247 283Right-handed alpha
Helix 14
14
A
293 324Right-handed alpha
Helix 15
15
A
327 354Right-handed alpha
Helix 16
16
A
355 359Right-handed 310
Helix 17
17
A
363 377Right-handed alpha
Helix 18
18
A
380 394Right-handed alpha
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There are 3 sheets in PDB entry 3SF6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
186 193parallel
Strand 3
A
196 203anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
168 179anti-parallel
Strand 3
A
225 236anti-parallel
Strand 4
A
209 213anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
288 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il