Analysis of interatomic Contacts of Structural Units in PDB entry:
3SFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SFV entry

There are 2 chains in PDB entry 3SFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -2MET 176
B
 LYS 225HIS 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3SFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 34Right-handed alpha
Helix 2
2
A
70 74Right-handed 310
Helix 3
3
A
76 81Right-handed alpha
Helix 4
4
A
95 101Right-handed alpha
Helix 5
5
A
101 113Right-handed alpha
Helix 6
6
A
128 132Right-handed 310
Helix 7
7
A
135 146Right-handed alpha
Helix 8
8
A
160 174Right-handed alpha
Helix 9
9
B
225 249Right-handed alpha
Helix 10
10
B
249 257Right-handed alpha
Helix 11
11
B
261 286Right-handed alpha
Helix 12
12
B
289 318Right-handed alpha
Helix 13
13
B
333 337Right-handed 310
Helix 14
14
B
361 366Right-handed alpha
Helix 15
15
B
368 414Right-handed alpha
Helix 16
16
B
417 449Right-handed alpha
Helix 17
17
B
464 468Right-handed 310
Helix 18
18
B
509 514Right-handed alpha
Helix 19
19
B
516 529Right-handed alpha
Helix 20
20
B
530 533Right-handed 310
Helix 21
21
B
537 563Right-handed alpha
Helix 22
22
B
564 566Right-handed 310
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There are 6 sheets in PDB entry 3SFV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 55first strand
Strand 2
A
58 66anti-parallel
Strand 3
A
10 17parallel
Strand 4
A
86 92parallel
Strand 5
A
118 124parallel
Strand 6
A
150 152parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
339 341anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 350first strand
Strand 2
B
353 358anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 462first strand
Strand 2
B
452 455anti-parallel
Strand 3
B
470 473anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 481first strand
Strand 2
B
484 489anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
492 497first strand
Strand 2
B
500 505anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il