Analysis of interatomic Contacts of Structural Units in PDB entry:
3SGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SGG entry

There is 1 chain in PDB entry 3SGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 46LYS 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3SGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 97Right-handed alpha
Helix 2
2
A
107 121Right-handed alpha
Helix 3
3
A
129 140Right-handed alpha
Helix 4
4
A
158 171Right-handed alpha
Helix 5
5
A
179 186Right-handed alpha
Helix 6
6
A
199 208Right-handed alpha
Helix 7
7
A
209 211Right-handed 310
Helix 8
8
A
227 235Right-handed alpha
Helix 9
9
A
248 257Right-handed alpha
Helix 10
10
A
271 282Right-handed alpha
Helix 11
11
A
294 299Right-handed alpha
Helix 12
12
A
334 340Right-handed alpha
Helix 13
13
A
340 347Right-handed alpha
Helix 14
14
A
363 368Right-handed alpha
Helix 15
15
A
368 379Right-handed alpha
Helix 16
16
A
396 400Right-handed 310
Helix 17
17
A
401 420Right-handed alpha
Helix 18
18
A
430 433Right-handed 310
Helix 19
19
A
434 444Right-handed alpha
Helix 20
20
A
482 487Right-handed alpha
Helix 21
21
A
491 502Right-handed alpha
Helix 22
22
A
508 510Right-handed 310
Helix 23
23
A
523 533Right-handed alpha
Helix 24
24
A
542 555Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 3SGG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 104first strand
Strand 2
A
69 74parallel
Strand 3
A
124 127parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
145 149parallel
Strand 3
A
191 194parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
215 218parallel
Strand 3
A
263 266parallel
Strand 4
A
285 288parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 387first strand
Strand 2
A
356 360parallel
Strand 3
A
323 329parallel
Strand 4
A
512 517parallel
Strand 5
A
477 479parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 387first strand
Strand 2
A
356 360parallel
Strand 3
A
323 329parallel
Strand 4
A
538 540parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 428first strand
Strand 2
A
449 454parallel
Strand 3
A
471 474parallel
Strand 4
A
463 465anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il