Analysis of interatomic Contacts of Structural Units in PDB entry:
3SHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SHF entry

There is 1 chain in PDB entry 3SHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 102GLU 1249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3SHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
108 117Right-handed alpha
Helix 2
2
A
129 142Right-handed alpha
Helix 3
3
A
159 168Right-handed alpha
Helix 4
4
A
170 175Right-handed alpha
Helix 5
5
A
191 207Right-handed alpha
Helix 6
6
A
219 232Right-handed alpha
Helix 7
7
A
247 252Right-handed alpha
Helix 8
8
A
287 300Right-handed alpha
Helix 9
9
A
308 318Right-handed alpha
Helix 10
10
A
320 334Right-handed alpha
Helix 11
11
A
337 347Right-handed alpha
Helix 12
12
A
360 374Right-handed alpha
Helix 13
13
A
379 386Right-handed alpha
Helix 14
14
A
387 389Right-handed 310
Helix 15
15
A
397 405Right-handed alpha
Helix 16
16
A
407 421Right-handed alpha
Helix 17
17
A
438 449Right-handed alpha
Helix 18
18
A
452 466Right-handed alpha
Helix 19
19
A
469 473Right-handed 310
Helix 20
20
A
479 493Right-handed alpha
Helix 21
21
A
496 505Right-handed alpha
Helix 22
22
A
506 518Right-handed alpha
Helix 23
23
A
519 529Right-handed alpha
Helix 24
24
A
539 551Right-handed alpha
Helix 25
25
A
552 555Right-handed 310
Helix 26
26
A
564 569Right-handed alpha
Helix 27
27
A
574 586Right-handed alpha
Helix 28
28
A
597 601Right-handed 310
Helix 29
29
A
911 915Right-handed alpha
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There are 17 sheets in PDB entry 3SHF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 188first strand
Strand 2
A
238 245parallel
Strand 3
A
259 264parallel
Strand 4
A
149 153parallel
Strand 5
A
277 279parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
433 436anti-parallel
Strand 3
A
425 428anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 611first strand
Strand 2
A
906 910anti-parallel
Strand 3
A
896 901anti-parallel
Strand 4
A
885 890anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
629 631anti-parallel
Strand 3
A
641 643anti-parallel
Strand 4
A
649 651anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 665first strand
Strand 2
A
671 675anti-parallel
Strand 3
A
680 685anti-parallel
Strand 4
A
691 696anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 707first strand
Strand 2
A
715 720anti-parallel
Strand 3
A
725 729anti-parallel
Strand 4
A
735 738anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 748first strand
Strand 2
A
757 762anti-parallel
Strand 3
A
766 771anti-parallel
Strand 4
A
776 782anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
801 802first strand
Strand 2
A
813 817anti-parallel
Strand 3
A
820 824anti-parallel
Strand 4
A
831 836anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
845 848first strand
Strand 2
A
854 858anti-parallel
Strand 3
A
864 868anti-parallel
Strand 4
A
873 878anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
922 930first strand
Strand 2
A
935 941anti-parallel
Strand 3
A
946 949anti-parallel
Strand 4
A
957 959anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 966first strand
Strand 2
A
975 980anti-parallel
Strand 3
A
985 989anti-parallel
Strand 4
A
996 997anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1009 1011first strand
Strand 2
A
1018 1021anti-parallel
Strand 3
A
1026 1030anti-parallel
Strand 4
A
1037 1041anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1052first strand
Strand 2
A
1057 1061anti-parallel
Strand 3
A
1066 1071anti-parallel
Strand 4
A
1080 1082anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1101 1102first strand
Strand 2
A
1109 1112anti-parallel
Strand 3
A
1121 1123anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1134 1135first strand
Strand 2
A
1141 1145anti-parallel
Strand 3
A
1151 1155anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1194 1195first strand
Strand 2
A
1201 1202anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1225 1226first strand
Strand 2
A
1233 1236anti-parallel
Strand 3
A
1242 1243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il