Analysis of interatomic Contacts of Structural Units in PDB entry:
3SHI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SHI entry

There are 3 chains in PDB entry 3SHI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 106GLY 261
G
 ASN 106GLY 261
M
 ASN 106GLY 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3SHI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
126 143Right-handed alpha
Helix 2
2
A
211 224Right-handed alpha
Helix 3
3
A
249 261Right-handed alpha
Helix 4
4
G
126 143Right-handed alpha
Helix 5
5
G
211 225Right-handed alpha
Helix 6
6
G
249 261Right-handed alpha
Helix 7
7
M
126 143Right-handed alpha
Helix 8
8
M
211 225Right-handed alpha
Helix 9
9
M
249 261Right-handed alpha
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There are 3 sheets in PDB entry 3SHI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
113 118parallel
Strand 3
A
159 164parallel
Strand 4
A
195 198parallel
Strand 5
A
182 184anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
148 151first strand
Strand 2
G
113 118parallel
Strand 3
G
159 164parallel
Strand 4
G
195 198parallel
Strand 5
G
182 184anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
148 151first strand
Strand 2
M
113 118parallel
Strand 3
M
159 164parallel
Strand 4
M
195 198parallel
Strand 5
M
182 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il