Analysis of interatomic Contacts of Structural Units in PDB entry:
3SHW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SHW entry

There are 2 chains in PDB entry 3SHW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 421GLU 802
B
 GLY 1134ILE 1140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3SHW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
454 459Right-handed alpha
Helix 2
2
A
479 490Right-handed alpha
Helix 3
3
A
503 514Right-handed alpha
Helix 4
4
A
549 553Right-handed 310
Helix 5
5
A
576 589Right-handed alpha
Helix 6
6
A
653 665Right-handed alpha
Helix 7
7
A
690 699Right-handed alpha
Helix 8
8
A
709 719Right-handed alpha
Helix 9
9
A
732 744Right-handed alpha
Helix 10
10
A
750 766Right-handed alpha
Helix 11
11
A
767 769Right-handed 310
Helix 12
12
A
781 795Right-handed alpha
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There are 4 sheets in PDB entry 3SHW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 428first strand
Strand 2
A
495 502anti-parallel
Strand 3
A
465 470anti-parallel
Strand 4
A
473 474anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 440first strand
Strand 2
A
444 450anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 575first strand
Strand 2
A
556 562anti-parallel
Strand 3
A
542 547anti-parallel
Strand 4
A
519 523anti-parallel
Strand 5
A
633 639anti-parallel
Strand 6
A
798 801anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 671first strand
Strand 2
A
703 706parallel
Strand 3
A
647 650parallel
Strand 4
A
724 729parallel
Strand 5
A
771 774parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il