Analysis of interatomic Contacts of Structural Units in PDB entry:
3SIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SIV entry

There are 12 chains in PDB entry 3SIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 128
B
 GLU 85GLN 332
C
 U 26 A 57
D
 ALA 4VAL 128
E
 ALA 86GLN 332
F
 U 26 A 57
G
 MET 1VAL 128
H
 ALA 86GLN 332
I
 U 26 A 57
J
 GLU 3VAL 128
K
 ALA 86GLN 332
L
 U 26 A 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 3SIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 32Right-handed alpha
Helix 2
2
A
38 48Right-handed alpha
Helix 3
3
A
62 66Right-handed 310
Helix 4
4
A
67 76Right-handed alpha
Helix 5
5
A
85 93Right-handed alpha
Helix 6
6
A
112 128Right-handed alpha
Helix 7
7
B
88 119Right-handed alpha
Helix 8
8
B
124 129Right-handed alpha
Helix 9
9
B
131 143Right-handed alpha
Helix 10
10
B
153 158Right-handed alpha
Helix 11
11
B
161 173Right-handed alpha
Helix 12
12
B
180 216Right-handed alpha
Helix 13
13
B
216 224Right-handed alpha
Helix 14
14
B
224 236Right-handed alpha
Helix 15
15
B
237 244Right-handed alpha
Helix 16
16
B
245 251Right-handed alpha
Helix 17
17
B
277 282Right-handed alpha
Helix 18
18
B
284 286Right-handed 310
Helix 19
19
B
287 308Right-handed alpha
Helix 20
20
B
314 331Right-handed alpha
Helix 21
21
D
15 32Right-handed alpha
Helix 22
22
D
38 48Right-handed alpha
Helix 23
23
D
62 67Right-handed 310
Helix 24
24
D
68 76Right-handed alpha
Helix 25
25
D
85 94Right-handed alpha
Helix 26
26
D
112 125Right-handed alpha
Helix 27
27
E
88 119Right-handed alpha
Helix 28
28
E
120 121Right-handed 310
Helix 29
29
E
122 128Right-handed 310
Helix 30
30
E
131 142Right-handed alpha
Helix 31
31
E
145 150Right-handed 310
Helix 32
32
E
152 157Right-handed alpha
Helix 33
33
E
160 171Right-handed alpha
Helix 34
34
E
180 216Right-handed alpha
Helix 35
35
E
216 223Right-handed alpha
Helix 36
36
E
224 236Right-handed alpha
Helix 37
37
E
237 243Right-handed alpha
Helix 38
38
E
245 252Right-handed alpha
Helix 39
39
E
272 277Right-handed alpha
Helix 40
40
E
277 282Right-handed alpha
Helix 41
41
E
284 286Right-handed 310
Helix 42
42
E
287 307Right-handed alpha
Helix 43
43
E
314 332Right-handed alpha
Helix 44
44
G
15 32Right-handed alpha
Helix 45
45
G
38 48Right-handed alpha
Helix 46
46
G
62 66Right-handed 310
Helix 47
47
G
67 73Right-handed alpha
Helix 48
48
G
85 93Right-handed alpha
Helix 49
49
G
112 128Right-handed alpha
Helix 50
50
H
88 117Right-handed alpha
Helix 51
51
H
133 139Right-handed alpha
Helix 52
52
H
180 190Right-handed alpha
Helix 53
53
H
191 216Right-handed alpha
Helix 54
54
H
216 223Right-handed alpha
Helix 55
55
H
224 236Right-handed alpha
Helix 56
56
H
237 242Right-handed alpha
Helix 57
57
H
245 250Right-handed alpha
Helix 58
58
H
272 277Right-handed alpha
Helix 59
59
H
284 286Right-handed 310
Helix 60
60
H
287 307Right-handed alpha
Helix 61
61
H
314 332Right-handed alpha
Helix 62
62
J
15 32Right-handed alpha
Helix 63
63
J
38 48Right-handed alpha
Helix 64
64
J
62 66Right-handed 310
Helix 65
65
J
68 77Right-handed alpha
Helix 66
66
J
85 93Right-handed alpha
Helix 67
67
J
112 128Right-handed alpha
Helix 68
68
K
88 117Right-handed alpha
Helix 69
69
K
124 129Right-handed alpha
Helix 70
70
K
131 143Right-handed alpha
Helix 71
71
K
152 157Right-handed alpha
Helix 72
72
K
160 169Right-handed alpha
Helix 73
73
K
180 209Right-handed alpha
Helix 74
74
K
211 216Right-handed alpha
Helix 75
75
K
216 221Right-handed alpha
Helix 76
76
K
224 236Right-handed alpha
Helix 77
77
K
238 243Right-handed alpha
Helix 78
78
K
245 250Right-handed alpha
Helix 79
79
K
272 277Right-handed alpha
Helix 80
80
K
277 282Right-handed alpha
Helix 81
81
K
286 307Right-handed alpha
Helix 82
82
K
314 330Right-handed alpha
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There are 4 sheets in PDB entry 3SIV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
51 57anti-parallel
Strand 4
A
80 83parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 37first strand
Strand 2
D
101 105anti-parallel
Strand 3
D
51 56anti-parallel
Strand 4
D
80 82parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
35 37first strand
Strand 2
G
101 105anti-parallel
Strand 3
G
51 57anti-parallel
Strand 4
G
80 83parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
35 37first strand
Strand 2
J
101 105anti-parallel
Strand 3
J
51 57anti-parallel
Strand 4
J
80 83parallel
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