Analysis of interatomic Contacts of Structural Units in PDB entry:
3SJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SJA entry

There are 6 chains in PDB entry 3SJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLU 354
B
 THR 4GLU 354
C
 MET 35HIS 95
D
 MET 35HIS 95
E
 VAL 5LYS 353
F
 THR 4ARG 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 84 helices in PDB entry 3SJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 15Right-handed alpha
Helix 2
2
A
30 46Right-handed alpha
Helix 3
3
A
61 67Right-handed alpha
Helix 4
4
A
89 104Right-handed alpha
Helix 5
5
A
117 131Right-handed alpha
Helix 6
6
A
135 157Right-handed alpha
Helix 7
7
A
174 177Right-handed 310
Helix 8
8
A
178 195Right-handed alpha
Helix 9
9
A
198 205Right-handed alpha
Helix 10
10
A
205 231Right-handed alpha
Helix 11
11
A
245 261Right-handed alpha
Helix 12
12
A
276 280Right-handed 310
Helix 13
13
A
285 304Right-handed alpha
Helix 14
14
A
323 332Right-handed alpha
Helix 15
15
A
333 335Right-handed 310
Helix 16
16
A
339 354Right-handed alpha
Helix 17
17
B
9 15Right-handed alpha
Helix 18
18
B
30 46Right-handed alpha
Helix 19
19
B
61 67Right-handed alpha
Helix 20
20
B
89 104Right-handed alpha
Helix 21
21
B
116 131Right-handed alpha
Helix 22
22
B
135 157Right-handed alpha
Helix 23
23
B
178 195Right-handed alpha
Helix 24
24
B
200 205Right-handed alpha
Helix 25
25
B
205 231Right-handed alpha
Helix 26
26
B
245 262Right-handed alpha
Helix 27
27
B
285 306Right-handed alpha
Helix 28
28
B
323 332Right-handed alpha
Helix 29
29
B
333 335Right-handed 310
Helix 30
30
B
343 354Right-handed alpha
Helix 31
31
C
36 57Right-handed alpha
Helix 32
32
C
64 92Right-handed alpha
Helix 33
33
D
36 57Right-handed alpha
Helix 34
34
D
64 92Right-handed alpha
Helix 35
35
E
9 15Right-handed alpha
Helix 36
36
E
30 46Right-handed alpha
Helix 37
37
E
61 67Right-handed alpha
Helix 38
38
E
89 104Right-handed alpha
Helix 39
39
E
117 131Right-handed alpha
Helix 40
40
E
135 157Right-handed alpha
Helix 41
41
E
178 195Right-handed alpha
Helix 42
42
E
198 205Right-handed alpha
Helix 43
43
E
205 231Right-handed alpha
Helix 44
44
E
245 262Right-handed alpha
Helix 45
45
E
285 306Right-handed alpha
Helix 46
46
E
323 332Right-handed alpha
Helix 47
47
E
333 335Right-handed 310
Helix 48
48
E
343 353Right-handed alpha
Helix 49
49
F
9 14Right-handed alpha
Helix 50
50
F
30 46Right-handed alpha
Helix 51
51
F
61 67Right-handed alpha
Helix 52
52
F
89 105Right-handed alpha
Helix 53
53
F
116 131Right-handed alpha
Helix 54
54
F
135 157Right-handed alpha
Helix 55
55
F
172 177Right-handed 310
Helix 56
56
F
178 195Right-handed alpha
Helix 57
57
F
198 205Right-handed alpha
Helix 58
58
F
205 231Right-handed alpha
Helix 59
59
F
245 262Right-handed alpha
Helix 60
60
F
276 280Right-handed 310
Helix 61
61
F
285 306Right-handed alpha
Helix 62
62
F
323 336Right-handed alpha
Helix 63
63
F
343 354Right-handed alpha
Helix 64
64
G
36 58Right-handed alpha
Helix 65
65
G
64 92Right-handed alpha
Helix 66
66
H
36 57Right-handed alpha
Helix 67
67
H
64 92Right-handed alpha
Helix 68
68
I
9 14Right-handed alpha
Helix 69
69
I
30 46Right-handed alpha
Helix 70
70
I
61 67Right-handed alpha
Helix 71
71
I
89 105Right-handed alpha
Helix 72
72
I
116 131Right-handed alpha
Helix 73
73
I
135 157Right-handed alpha
Helix 74
74
I
172 177Right-handed 310
Helix 75
75
I
178 195Right-handed alpha
Helix 76
76
I
198 205Right-handed alpha
Helix 77
77
I
205 231Right-handed alpha
Helix 78
78
I
245 262Right-handed alpha
Helix 79
79
I
276 280Right-handed 310
Helix 80
80
I
285 306Right-handed alpha
Helix 81
81
I
323 336Right-handed alpha
Helix 82
82
I
343 353Right-handed alpha
Helix 83
83
J
36 57Right-handed alpha
Helix 84
84
J
64 92Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3SJA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
51 55parallel
Strand 3
A
162 166parallel
Strand 4
A
20 24parallel
Strand 5
A
236 243parallel
Strand 6
A
265 274parallel
Strand 7
A
310 315parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
83 87anti-parallel
Strand 3
B
51 55parallel
Strand 4
B
162 166parallel
Strand 5
B
20 24parallel
Strand 6
B
236 243parallel
Strand 7
B
266 274parallel
Strand 8
B
310 315parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
75 76first strand
Strand 2
E
83 87anti-parallel
Strand 3
E
51 55parallel
Strand 4
E
162 166parallel
Strand 5
E
20 24parallel
Strand 6
E
236 243parallel
Strand 7
E
266 274parallel
Strand 8
E
310 315parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
75 76first strand
Strand 2
F
83 87anti-parallel
Strand 3
F
51 55parallel
Strand 4
F
162 166parallel
Strand 5
F
20 24parallel
Strand 6
F
236 243parallel
Strand 7
F
266 274parallel
Strand 8
F
310 315parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
75 76first strand
Strand 2
I
83 87anti-parallel
Strand 3
I
51 55parallel
Strand 4
I
162 166parallel
Strand 5
I
20 24parallel
Strand 6
I
236 243parallel
Strand 7
I
266 274parallel
Strand 8
I
310 315parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il