Analysis of interatomic Contacts of Structural Units in PDB entry:
3SJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SJD entry

There are 5 chains in PDB entry 3SJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ASP 352
B
 THR 4ASP 352
C
 THR 4ASP 352
D
 THR 5THR 34
E
 THR 5THR 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 3SJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
31 45Right-handed alpha
Helix 3
3
A
60 66Right-handed alpha
Helix 4
4
A
135 155Right-handed alpha
Helix 5
5
A
173 177Right-handed 310
Helix 6
6
A
178 195Right-handed alpha
Helix 7
7
A
210 231Right-handed alpha
Helix 8
8
A
245 261Right-handed alpha
Helix 9
9
A
285 305Right-handed alpha
Helix 10
10
A
323 332Right-handed alpha
Helix 11
11
A
333 335Right-handed 310
Helix 12
12
A
346 350Right-handed 310
Helix 13
13
B
9 14Right-handed alpha
Helix 14
14
B
31 45Right-handed alpha
Helix 15
15
B
60 66Right-handed alpha
Helix 16
16
B
135 155Right-handed alpha
Helix 17
17
B
173 176Right-handed 310
Helix 18
18
B
177 191Right-handed alpha
Helix 19
19
B
212 232Right-handed alpha
Helix 20
20
B
245 261Right-handed alpha
Helix 21
21
B
285 305Right-handed alpha
Helix 22
22
B
323 332Right-handed alpha
Helix 23
23
B
333 335Right-handed 310
Helix 24
24
B
339 344Right-handed alpha
Helix 25
25
B
346 350Right-handed 310
Helix 26
26
C
9 14Right-handed alpha
Helix 27
27
C
31 45Right-handed alpha
Helix 28
28
C
60 66Right-handed alpha
Helix 29
29
C
135 155Right-handed alpha
Helix 30
30
C
173 176Right-handed 310
Helix 31
31
C
177 189Right-handed alpha
Helix 32
32
C
211 232Right-handed alpha
Helix 33
33
C
245 261Right-handed alpha
Helix 34
34
C
285 305Right-handed alpha
Helix 35
35
C
323 332Right-handed alpha
Helix 36
36
C
333 335Right-handed 310
Helix 37
37
C
346 350Right-handed 310
Helix 38
38
D
5 23Right-handed alpha
Helix 39
39
D
26 34Right-handed alpha
Helix 40
40
E
5 23Right-handed alpha
Helix 41
41
E
26 34Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3SJD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
236 241parallel
Strand 3
A
268 270parallel
Strand 4
A
310 312parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
51 55parallel
Strand 4
A
163 164parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
83 86anti-parallel
Strand 3
B
51 54parallel
Strand 4
B
163 166parallel
Strand 5
B
20 24parallel
Strand 6
B
236 241parallel
Strand 7
B
268 270parallel
Strand 8
B
310 312parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 76first strand
Strand 2
C
83 87anti-parallel
Strand 3
C
51 55parallel
Strand 4
C
163 166parallel
Strand 5
C
20 24parallel
Strand 6
C
236 241parallel
Strand 7
C
268 270parallel
Strand 8
C
310 312parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il