Analysis of interatomic Contacts of Structural Units in PDB entry:
3SJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SJJ entry

There are 3 chains in PDB entry 3SJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 901
T
 T 1 G 18
P
 G 103 C 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3SJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 79Right-handed alpha
Helix 2
2
A
87 97Right-handed alpha
Helix 3
3
A
104 108Right-handed 310
Helix 4
4
A
163 169Right-handed alpha
Helix 5
5
A
170 174Right-handed 310
Helix 6
6
A
179 184Right-handed alpha
Helix 7
7
A
193 208Right-handed alpha
Helix 8
8
A
221 235Right-handed alpha
Helix 9
9
A
235 240Right-handed alpha
Helix 10
10
A
241 243Right-handed 310
Helix 11
11
A
272 281Right-handed alpha
Helix 12
12
A
289 299Right-handed alpha
Helix 13
13
A
308 339Right-handed alpha
Helix 14
14
A
339 352Right-handed alpha
Helix 15
15
A
354 359Right-handed 310
Helix 16
16
A
360 375Right-handed alpha
Helix 17
17
A
414 424Right-handed alpha
Helix 18
18
A
438 444Right-handed alpha
Helix 19
19
A
469 503Right-handed alpha
Helix 20
20
A
523 531Right-handed alpha
Helix 21
21
A
534 570Right-handed alpha
Helix 22
22
A
579 609Right-handed alpha
Helix 23
23
A
629 635Right-handed alpha
Helix 24
24
A
643 658Right-handed alpha
Helix 25
25
A
658 675Right-handed alpha
Helix 26
26
A
730 734Right-handed 310
Helix 27
27
A
738 755Right-handed alpha
Helix 28
28
A
756 771Right-handed alpha
Helix 29
29
A
772 774Right-handed 310
Helix 30
30
A
788 792Right-handed 310
Helix 31
31
A
802 815Right-handed alpha
Helix 32
32
A
855 864Right-handed alpha
Helix 33
33
A
867 876Right-handed alpha
Helix 34
34
A
876 887Right-handed alpha
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There are 10 sheets in PDB entry 3SJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
26 31anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
57 61anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
378 379parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 191first strand
Strand 2
A
145 151parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
110 116anti-parallel
Strand 5
A
212 214parallel
Strand 6
A
269 270parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
264 265anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
700 704anti-parallel
Strand 3
A
707 715anti-parallel
Strand 4
A
683 689anti-parallel
Strand 5
A
407 412anti-parallel
Strand 6
A
624 628anti-parallel
Strand 7
A
617 619anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
700 704anti-parallel
Strand 3
A
707 715anti-parallel
Strand 4
A
718 728anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 433first strand
Strand 2
A
461 463anti-parallel
Strand 3
A
455 456anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 784first strand
Strand 2
A
829 834anti-parallel
Strand 3
A
845 849anti-parallel
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