Analysis of interatomic Contacts of Structural Units in PDB entry:
3SJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SJQ entry

There are 4 chains in PDB entry 3SJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 147
B
 ASP 2THR 146
C
 THR 414HIS 493
D
 GLN 415GLU 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3SJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 20Right-handed alpha
Helix 2
2
A
28 39Right-handed alpha
Helix 3
3
A
44 54Right-handed alpha
Helix 4
4
A
65 93Right-handed alpha
Helix 5
5
A
101 112Right-handed alpha
Helix 6
6
A
117 129Right-handed alpha
Helix 7
7
A
138 147Right-handed alpha
Helix 8
8
B
5 20Right-handed alpha
Helix 9
9
B
28 39Right-handed alpha
Helix 10
10
B
44 54Right-handed alpha
Helix 11
11
B
64 93Right-handed alpha
Helix 12
12
B
101 112Right-handed alpha
Helix 13
13
B
117 129Right-handed alpha
Helix 14
14
B
138 146Right-handed alpha
Helix 15
15
C
414 440Right-handed alpha
Helix 16
16
C
445 489Right-handed alpha
Helix 17
17
D
415 440Right-handed alpha
Helix 18
18
D
445 489Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3SJQ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
136 137anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il