Analysis of interatomic Contacts of Structural Units in PDB entry:
3SJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SJV entry

There are 20 chains in PDB entry 3SJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 277
B
 ILE 1MET 99
C
 PHE 1LEU 9
D
 LYS 2PRO 214
E
 ALA 2ASP 255
F
 GLY 1SER 277
G
 ILE 1MET 99
H
 PHE 1LEU 9
I
 LYS 2PRO 214
J
 GLY 3ASP 255
K
 GLY 1SER 277
L
 MET 0MET 99
M
 PHE 1LEU 9
N
 LYS 2PRO 214
O
 ALA 3ASP 255
P
 GLY 1SER 277
Q
 MET 0MET 99
R
 PHE 1LEU 9
S
 LYS 2PRO 214
T
 ALA 3ASP 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3SJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 53Right-handed 310
Helix 2
2
A
56 85Right-handed alpha
Helix 3
3
A
137 151Right-handed alpha
Helix 4
4
A
151 161Right-handed alpha
Helix 5
5
A
162 167Right-handed alpha
Helix 6
6
A
167 175Right-handed alpha
Helix 7
7
A
175 180Right-handed alpha
Helix 8
8
E
127 131Right-handed 310
Helix 9
9
E
142 150Right-handed alpha
Helix 10
10
E
210 212Right-handed 310
Helix 11
11
F
49 54Right-handed alpha
Helix 12
12
F
56 85Right-handed alpha
Helix 13
13
F
139 150Right-handed alpha
Helix 14
14
F
151 161Right-handed alpha
Helix 15
15
F
164 175Right-handed alpha
Helix 16
16
F
175 180Right-handed alpha
Helix 17
17
I
95 99Right-handed 310
Helix 18
18
I
175 179Right-handed 310
Helix 19
19
J
127 131Right-handed 310
Helix 20
20
J
142 149Right-handed alpha
Helix 21
21
K
49 54Right-handed alpha
Helix 22
22
K
56 83Right-handed alpha
Helix 23
23
K
139 150Right-handed alpha
Helix 24
24
K
151 162Right-handed alpha
Helix 25
25
K
162 174Right-handed alpha
Helix 26
26
K
175 181Right-handed alpha
Helix 27
27
N
95 99Right-handed 310
Helix 28
28
O
127 131Right-handed 310
Helix 29
29
O
144 148Right-handed 310
Helix 30
30
O
172 175Right-handed 310
Helix 31
31
O
210 212Right-handed 310
Helix 32
32
P
50 55Right-handed 310
Helix 33
33
P
56 86Right-handed alpha
Helix 34
34
P
137 151Right-handed alpha
Helix 35
35
P
151 162Right-handed alpha
Helix 36
36
P
162 175Right-handed alpha
Helix 37
37
P
177 181Right-handed 310
Helix 38
38
T
142 147Right-handed alpha
Helix 39
39
T
209 214Right-handed alpha
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There are 50 sheets in PDB entry 3SJV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
23 28anti-parallel
Strand 3
A
3 12anti-parallel
Strand 4
A
94 103anti-parallel
Strand 5
A
109 118anti-parallel
Strand 6
A
121 125anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
24 28anti-parallel
Strand 3
B
62 67anti-parallel
Strand 4
B
55 56anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 41first strand
Strand 2
B
78 84anti-parallel
Strand 3
B
91 94anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 5first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
79 84anti-parallel
Strand 5
D
60 66anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 56first strand
Strand 2
D
39 43anti-parallel
Strand 3
D
104 106anti-parallel
Strand 4
D
112 113anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 135first strand
Strand 2
D
145 149anti-parallel
Strand 3
D
184 189anti-parallel
Strand 4
D
165 168anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
77 79anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
120 125parallel
Strand 3
E
101 106anti-parallel
Strand 4
E
39 44anti-parallel
Strand 5
E
50 56anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
120 125parallel
Strand 3
E
101 106anti-parallel
Strand 4
E
115 116anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
135 139first strand
Strand 2
E
151 161anti-parallel
Strand 3
E
199 208anti-parallel
Strand 4
E
181 183anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
175 177first strand
Strand 2
E
166 172anti-parallel
Strand 3
E
218 225anti-parallel
Strand 4
E
244 251anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 37first strand
Strand 2
F
21 28anti-parallel
Strand 3
F
5 12anti-parallel
Strand 4
F
94 103anti-parallel
Strand 5
F
109 118anti-parallel
Strand 6
F
121 126anti-parallel
Strand 7
F
133 135anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
230 231first strand
Strand 2
F
244 245anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 11first strand
Strand 2
G
21 30anti-parallel
Strand 3
G
62 70anti-parallel
Strand 4
G
55 56anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
36 39first strand
Strand 2
G
79 83anti-parallel
Strand 3
G
91 94anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
4 6first strand
Strand 2
I
19 25anti-parallel
Strand 3
I
86 91anti-parallel
Strand 4
I
79 84anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 13first strand
Strand 2
I
117 121parallel
Strand 3
I
101 106anti-parallel
Strand 4
I
39 44anti-parallel
Strand 5
I
51 56anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 13first strand
Strand 2
I
117 121parallel
Strand 3
I
101 106anti-parallel
Strand 4
I
112 113anti-parallel
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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
165 167first strand
Strand 2
I
185 189anti-parallel
Strand 3
I
145 149anti-parallel
Strand 4
I
131 137anti-parallel
Strand 5
J
138 140anti-parallel
Strand 6
J
151 161anti-parallel
Strand 7
J
199 208anti-parallel
Strand 8
J
181 183anti-parallel
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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
165 167first strand
Strand 2
I
185 189anti-parallel
Strand 3
I
145 149anti-parallel
Strand 4
I
131 137anti-parallel
Strand 5
J
138 140anti-parallel
Strand 6
J
151 161anti-parallel
Strand 7
J
199 208anti-parallel
Strand 8
J
188 189anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 14first strand
Strand 2
J
120 125parallel
Strand 3
J
100 107anti-parallel
Strand 4
J
31 44anti-parallel
Strand 5
J
50 56anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 14first strand
Strand 2
J
120 125parallel
Strand 3
J
100 107anti-parallel
Strand 4
J
115 116anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
19 24first strand
Strand 2
J
86 91anti-parallel
Strand 3
J
77 79anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
175 176first strand
Strand 2
J
166 172anti-parallel
Strand 3
J
219 225anti-parallel
Strand 4
J
245 250anti-parallel
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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
31 37first strand
Strand 2
K
21 28anti-parallel
Strand 3
K
4 12anti-parallel
Strand 4
K
94 103anti-parallel
Strand 5
K
109 118anti-parallel
Strand 6
K
121 125anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
218 219first strand
Strand 2
K
222 223anti-parallel
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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 11first strand
Strand 2
L
21 28anti-parallel
Strand 3
L
63 70anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
4 5first strand
Strand 2
N
21 25anti-parallel
Strand 3
N
86 91anti-parallel
Strand 4
N
79 84anti-parallel
Strand 5
N
60 66anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
52 56first strand
Strand 2
N
39 44anti-parallel
Strand 3
N
101 106anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
131 133first strand
Strand 2
N
147 149anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
167 168first strand
Strand 2
N
186 187anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
4 8first strand
Strand 2
O
20 27anti-parallel
Strand 3
O
86 91anti-parallel
Strand 4
O
76 79anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
11 15first strand
Strand 2
O
120 125parallel
Strand 3
O
101 105anti-parallel
Strand 4
O
39 44anti-parallel
Strand 5
O
50 56anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
135 139first strand
Strand 2
O
151 161anti-parallel
Strand 3
O
199 208anti-parallel
Strand 4
O
182 183anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
135 139first strand
Strand 2
O
151 161anti-parallel
Strand 3
O
199 208anti-parallel
Strand 4
O
188 189anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
166 170first strand
Strand 2
O
220 225anti-parallel
Strand 3
O
244 245anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
166 170first strand
Strand 2
O
220 225anti-parallel
Strand 3
O
248 249anti-parallel
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There are 7 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
31 37first strand
Strand 2
P
21 28anti-parallel
Strand 3
P
5 13anti-parallel
Strand 4
P
93 103anti-parallel
Strand 5
P
109 118anti-parallel
Strand 6
P
121 126anti-parallel
Strand 7
P
133 135anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
214 216first strand
Strand 2
P
260 262anti-parallel
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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
218 219first strand
Strand 2
P
222 223anti-parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
9 11first strand
Strand 2
Q
23 30anti-parallel
Strand 3
Q
62 68anti-parallel
Strand 4
Q
55 56anti-parallel
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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
36 38first strand
Strand 2
Q
81 83anti-parallel
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There are 5 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
4 6first strand
Strand 2
S
19 25anti-parallel
Strand 3
S
86 91anti-parallel
Strand 4
S
79 84anti-parallel
Strand 5
S
60 66anti-parallel
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There are 5 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
11 13first strand
Strand 2
S
117 121parallel
Strand 3
S
100 106anti-parallel
Strand 4
S
39 44anti-parallel
Strand 5
S
50 56anti-parallel
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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
11 13first strand
Strand 2
S
117 121parallel
Strand 3
S
100 106anti-parallel
Strand 4
S
112 113anti-parallel
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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
131 133first strand
Strand 2
S
145 149anti-parallel
Strand 3
S
184 189anti-parallel
Strand 4
S
165 167anti-parallel
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There are 5 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
136 137first strand
Strand 2
T
138 140anti-parallel
Strand 3
T
151 161anti-parallel
Strand 4
T
199 208anti-parallel
Strand 5
T
181 183anti-parallel
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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
5 8first strand
Strand 2
T
20 26anti-parallel
Strand 3
T
86 91anti-parallel
Strand 4
T
76 79anti-parallel
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There are 5 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
11 15first strand
Strand 2
T
120 125parallel
Strand 3
T
100 105anti-parallel
Strand 4
T
39 44anti-parallel
Strand 5
T
51 56anti-parallel
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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
166 172first strand
Strand 2
T
218 225anti-parallel
Strand 3
T
245 251anti-parallel
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