Analysis of interatomic Contacts of Structural Units in PDB entry:
3SLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SLC entry

There are 4 chains in PDB entry 3SLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ALA 400
B
 SER 3ALA 400
C
 SER 3ALA 400
D
 SER 3TYR 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 3SLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 73Right-handed alpha
Helix 2
2
A
73 78Right-handed alpha
Helix 3
3
A
78 84Right-handed alpha
Helix 4
4
A
106 117Right-handed alpha
Helix 5
5
A
122 138Right-handed alpha
Helix 6
6
A
139 142Right-handed 310
Helix 7
7
A
151 157Right-handed 310
Helix 8
8
A
158 163Right-handed alpha
Helix 9
9
A
167 175Right-handed alpha
Helix 10
10
A
182 198Right-handed alpha
Helix 11
11
A
200 204Right-handed 310
Helix 12
12
A
248 258Right-handed alpha
Helix 13
13
A
262 273Right-handed alpha
Helix 14
14
A
274 280Right-handed alpha
Helix 15
15
A
285 293Right-handed alpha
Helix 16
16
A
296 317Right-handed alpha
Helix 17
17
A
318 321Right-handed 310
Helix 18
18
A
332 338Right-handed alpha
Helix 19
19
A
338 347Right-handed alpha
Helix 20
20
A
357 364Right-handed alpha
Helix 21
21
A
386 400Right-handed alpha
Helix 22
22
B
62 73Right-handed alpha
Helix 23
23
B
73 78Right-handed alpha
Helix 24
24
B
106 117Right-handed alpha
Helix 25
25
B
123 138Right-handed alpha
Helix 26
26
B
139 142Right-handed 310
Helix 27
27
B
151 157Right-handed 310
Helix 28
28
B
158 163Right-handed alpha
Helix 29
29
B
168 175Right-handed alpha
Helix 30
30
B
182 197Right-handed alpha
Helix 31
31
B
200 204Right-handed 310
Helix 32
32
B
249 258Right-handed alpha
Helix 33
33
B
262 273Right-handed alpha
Helix 34
34
B
274 280Right-handed alpha
Helix 35
35
B
285 293Right-handed alpha
Helix 36
36
B
296 317Right-handed alpha
Helix 37
37
B
318 321Right-handed 310
Helix 38
38
B
332 338Right-handed alpha
Helix 39
39
B
338 347Right-handed alpha
Helix 40
40
B
348 353Right-handed 310
Helix 41
41
B
357 364Right-handed alpha
Helix 42
42
B
386 398Right-handed alpha
Helix 43
43
C
106 117Right-handed alpha
Helix 44
44
C
123 138Right-handed alpha
Helix 45
45
C
139 142Right-handed 310
Helix 46
46
C
151 157Right-handed 310
Helix 47
47
C
158 163Right-handed alpha
Helix 48
48
C
168 175Right-handed alpha
Helix 49
49
C
182 197Right-handed alpha
Helix 50
50
C
200 204Right-handed 310
Helix 51
51
C
248 258Right-handed alpha
Helix 52
52
C
262 273Right-handed alpha
Helix 53
53
C
275 280Right-handed alpha
Helix 54
54
C
285 293Right-handed alpha
Helix 55
55
C
296 317Right-handed alpha
Helix 56
56
C
318 321Right-handed 310
Helix 57
57
C
332 338Right-handed alpha
Helix 58
58
C
338 347Right-handed alpha
Helix 59
59
C
348 353Right-handed 310
Helix 60
60
C
357 364Right-handed alpha
Helix 61
61
C
386 400Right-handed alpha
Helix 62
62
D
62 73Right-handed alpha
Helix 63
63
D
78 84Right-handed alpha
Helix 64
64
D
106 116Right-handed alpha
Helix 65
65
D
122 138Right-handed alpha
Helix 66
66
D
139 142Right-handed 310
Helix 67
67
D
152 157Right-handed 310
Helix 68
68
D
158 163Right-handed alpha
Helix 69
69
D
168 173Right-handed alpha
Helix 70
70
D
182 197Right-handed alpha
Helix 71
71
D
200 204Right-handed 310
Helix 72
72
D
248 258Right-handed alpha
Helix 73
73
D
262 273Right-handed alpha
Helix 74
74
D
285 292Right-handed alpha
Helix 75
75
D
296 317Right-handed alpha
Helix 76
76
D
318 321Right-handed 310
Helix 77
77
D
332 338Right-handed alpha
Helix 78
78
D
338 347Right-handed alpha
Helix 79
79
D
348 353Right-handed 310
Helix 80
80
D
357 364Right-handed alpha
Helix 81
81
D
386 400Right-handed alpha
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There are 10 sheets in PDB entry 3SLC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
28 35anti-parallel
Strand 4
A
16 22anti-parallel
Strand 5
A
5 11anti-parallel
Strand 6
A
85 92parallel
Strand 7
A
145 149parallel
Strand 8
A
103 104anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
327 331parallel
Strand 5
A
380 382parallel
Strand 6
A
370 371anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 34first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
5 11anti-parallel
Strand 4
B
85 92parallel
Strand 5
B
145 149parallel
Strand 6
B
103 104anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
54 55anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 228first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
206 211anti-parallel
Strand 4
B
327 331parallel
Strand 5
B
380 382parallel
Strand 6
B
370 371anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 22first strand
Strand 2
C
5 11anti-parallel
Strand 3
C
85 92parallel
Strand 4
C
145 149parallel
Strand 5
C
103 104anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 47first strand
Strand 2
C
52 55anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 228first strand
Strand 2
C
215 221anti-parallel
Strand 3
C
206 211anti-parallel
Strand 4
C
327 331parallel
Strand 5
C
380 382parallel
Strand 6
C
370 371anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 56first strand
Strand 2
D
43 47anti-parallel
Strand 3
D
28 35anti-parallel
Strand 4
D
16 22anti-parallel
Strand 5
D
5 11anti-parallel
Strand 6
D
85 92parallel
Strand 7
D
145 149parallel
Strand 8
D
103 104anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
224 228first strand
Strand 2
D
215 221anti-parallel
Strand 3
D
206 211anti-parallel
Strand 4
D
327 331parallel
Strand 5
D
380 382parallel
Strand 6
D
370 371anti-parallel
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