Analysis of interatomic Contacts of Structural Units in PDB entry:
3SLF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SLF entry

There are 2 chains in PDB entry 3SLF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LYS 264
B
 MSE 1LYS 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 3SLF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 7Right-handed alpha
Helix 2
2
A
13 25Right-handed alpha
Helix 3
3
A
38 42Right-handed 310
Helix 4
4
A
46 60Right-handed alpha
Helix 5
5
A
71 75Right-handed 310
Helix 6
6
A
76 80Right-handed 310
Helix 7
7
A
86 88Right-handed 310
Helix 8
8
A
89 97Right-handed alpha
Helix 9
9
A
111 119Right-handed alpha
Helix 10
10
A
139 145Right-handed alpha
Helix 11
11
A
157 165Right-handed alpha
Helix 12
12
A
175 180Right-handed 310
Helix 13
13
A
181 190Right-handed alpha
Helix 14
14
A
218 220Right-handed 310
Helix 15
15
A
221 231Right-handed alpha
Helix 16
16
A
250 264Right-handed alpha
Helix 17
17
B
1 7Right-handed alpha
Helix 18
18
B
13 25Right-handed alpha
Helix 19
19
B
38 42Right-handed 310
Helix 20
20
B
46 60Right-handed alpha
Helix 21
21
B
71 75Right-handed 310
Helix 22
22
B
76 80Right-handed 310
Helix 23
23
B
88 97Right-handed alpha
Helix 24
24
B
111 118Right-handed alpha
Helix 25
25
B
139 145Right-handed alpha
Helix 26
26
B
157 165Right-handed alpha
Helix 27
27
B
175 180Right-handed 310
Helix 28
28
B
181 190Right-handed alpha
Helix 29
29
B
221 230Right-handed alpha
Helix 30
30
B
231 233Right-handed 310
Helix 31
31
B
250 263Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3SLF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
31 36parallel
Strand 5
A
168 172parallel
Strand 6
A
243 249anti-parallel
Strand 7
A
236 240anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 203first strand
Strand 2
A
206 215anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
133 137anti-parallel
Strand 3
B
64 68anti-parallel
Strand 4
B
31 36parallel
Strand 5
B
168 172parallel
Strand 6
B
243 249anti-parallel
Strand 7
B
236 240anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 203first strand
Strand 2
B
206 215anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il