Analysis of interatomic Contacts of Structural Units in PDB entry:
3SLH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3SLH entry

There are 3 chains in PDB entry 3SLH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	ARG 435
B	ALA 0	PHE 438
C	ASN -1	ALA 422

There are 76 helices in PDB entry 3SLH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	20	34	Right-handed alpha
Helix 2	2	A	46	59	Right-handed alpha
Helix 3	3	A	67	70	Right-handed 310
Helix 4	4	A	94	106	Right-handed alpha
Helix 5	5	A	119	123	Right-handed 310
Helix 6	6	A	125	135	Right-handed alpha
Helix 7	7	A	167	179	Right-handed alpha
Helix 8	8	A	195	204	Right-handed alpha
Helix 9	9	A	233	247	Right-handed alpha
Helix 10	10	A	260	263	Right-handed 310
Helix 11	11	A	264	274	Right-handed alpha
Helix 12	12	A	306	308	Right-handed 310
Helix 13	13	A	309	314	Right-handed alpha
Helix 14	14	A	316	326	Right-handed alpha
Helix 15	15	A	336	342	Right-handed 310
Helix 16	16	A	345	357	Right-handed alpha
Helix 17	17	A	385	399	Right-handed alpha
Helix 18	18	A	408	414	Right-handed 310
Helix 19	19	A	417	426	Right-handed alpha
Helix 20	20	B	20	33	Right-handed alpha
Helix 21	21	B	46	59	Right-handed alpha
Helix 22	22	B	67	70	Right-handed 310
Helix 23	23	B	94	107	Right-handed alpha
Helix 24	24	B	119	123	Right-handed 310
Helix 25	25	B	125	135	Right-handed alpha
Helix 26	26	B	167	179	Right-handed alpha
Helix 27	27	B	195	204	Right-handed alpha
Helix 28	28	B	233	247	Right-handed alpha
Helix 29	29	B	260	263	Right-handed 310
Helix 30	30	B	264	274	Right-handed alpha
Helix 31	31	B	306	308	Right-handed 310
Helix 32	32	B	309	314	Right-handed alpha
Helix 33	33	B	316	326	Right-handed alpha
Helix 34	34	B	336	342	Right-handed 310
Helix 35	35	B	345	357	Right-handed alpha
Helix 36	36	B	385	399	Right-handed alpha
Helix 37	37	B	408	414	Right-handed 310
Helix 38	38	B	417	425	Right-handed alpha
Helix 39	39	C	20	33	Right-handed alpha
Helix 40	40	C	46	59	Right-handed alpha
Helix 41	41	C	67	70	Right-handed 310
Helix 42	42	C	94	106	Right-handed alpha
Helix 43	43	C	119	123	Right-handed 310
Helix 44	44	C	125	135	Right-handed alpha
Helix 45	45	C	167	179	Right-handed alpha
Helix 46	46	C	195	204	Right-handed alpha
Helix 47	47	C	233	247	Right-handed alpha
Helix 48	48	C	260	263	Right-handed 310
Helix 49	49	C	264	274	Right-handed alpha
Helix 50	50	C	306	308	Right-handed 310
Helix 51	51	C	309	314	Right-handed alpha
Helix 52	52	C	316	326	Right-handed alpha
Helix 53	53	C	336	342	Right-handed 310
Helix 54	54	C	345	357	Right-handed alpha
Helix 55	55	C	385	399	Right-handed alpha
Helix 56	56	C	408	414	Right-handed 310
Helix 57	57	C	417	425	Right-handed alpha
Helix 58	58	D	20	33	Right-handed alpha
Helix 59	59	D	46	59	Right-handed alpha
Helix 60	60	D	67	70	Right-handed 310
Helix 61	61	D	94	107	Right-handed alpha
Helix 62	62	D	119	123	Right-handed 310
Helix 63	63	D	125	135	Right-handed alpha
Helix 64	64	D	167	181	Right-handed alpha
Helix 65	65	D	195	204	Right-handed alpha
Helix 66	66	D	233	247	Right-handed alpha
Helix 67	67	D	260	263	Right-handed 310
Helix 68	68	D	264	274	Right-handed alpha
Helix 69	69	D	306	310	Right-handed 310
Helix 70	70	D	313	315	Right-handed 310
Helix 71	71	D	316	326	Right-handed alpha
Helix 72	72	D	336	342	Right-handed 310
Helix 73	73	D	345	357	Right-handed alpha
Helix 74	74	D	385	399	Right-handed alpha
Helix 75	75	D	408	414	Right-handed 310
Helix 76	76	D	417	425	Right-handed alpha

There are 24 sheets in PDB entry 3SLH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	381	first strand
Strand 2	A	403	406	parallel
Strand 3	A	1	5	anti-parallel
Strand 4	A	429	433	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	251	258	parallel
Strand 3	A	288	296	anti-parallel
Strand 4	A	276	285	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	66	first strand
Strand 2	A	71	75	anti-parallel
Strand 3	A	37	41	anti-parallel
Strand 4	A	228	229	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	A	111	115	parallel
Strand 3	A	145	151	anti-parallel
Strand 4	A	138	142	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	184	188	parallel
Strand 3	A	215	218	anti-parallel
Strand 4	A	209	210	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	330	333	parallel
Strand 3	A	367	371	anti-parallel
Strand 4	A	360	364	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	381	first strand
Strand 2	B	403	406	parallel
Strand 3	B	1	5	anti-parallel
Strand 4	B	429	433	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	251	258	parallel
Strand 3	B	288	296	anti-parallel
Strand 4	B	276	285	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	37	41	anti-parallel
Strand 4	B	228	229	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	111	115	parallel
Strand 3	B	148	151	anti-parallel
Strand 4	B	138	141	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	184	188	parallel
Strand 3	B	214	218	anti-parallel
Strand 4	B	209	210	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	330	333	parallel
Strand 3	B	367	371	anti-parallel
Strand 4	B	360	364	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	381	first strand
Strand 2	C	403	406	parallel
Strand 3	C	1	5	anti-parallel
Strand 4	C	429	433	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	251	258	parallel
Strand 3	C	290	296	anti-parallel
Strand 4	C	276	283	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	71	75	anti-parallel
Strand 3	C	37	41	anti-parallel
Strand 4	C	228	229	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	90	first strand
Strand 2	C	111	115	parallel
Strand 3	C	145	151	anti-parallel
Strand 4	C	139	142	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	162	first strand
Strand 2	C	184	188	parallel
Strand 3	C	214	218	anti-parallel
Strand 4	C	209	211	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	333	first strand
Strand 2	C	367	371	anti-parallel
Strand 3	C	360	364	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	381	first strand
Strand 2	D	403	406	parallel
Strand 3	D	1	6	anti-parallel
Strand 4	D	428	433	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	251	258	parallel
Strand 3	D	290	296	anti-parallel
Strand 4	D	276	283	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	66	first strand
Strand 2	D	71	75	anti-parallel
Strand 3	D	37	41	anti-parallel
Strand 4	D	228	229	parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	111	115	parallel
Strand 3	D	145	151	anti-parallel
Strand 4	D	138	142	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	184	188	parallel
Strand 3	D	214	218	anti-parallel
Strand 4	D	209	211	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	333	first strand
Strand 2	D	367	371	anti-parallel
Strand 3	D	360	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3SLH

Analysis of interatomic Contacts of Structural Units in PDB entry:
3SLH