Analysis of interatomic Contacts of Structural Units in PDB entry:
3SO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SO0 entry

There are 8 chains in PDB entry 3SO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3SER 88
B
 THR 2SER 88
C
 ALA 4TYR 87
D
 ALA 4SER 88
E
 LYS 3SER 88
F
 LYS 3THR 89
G
 LYS 3THR 89
H
 ALA 4SER 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3SO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 33Right-handed alpha
Helix 2
2
B
26 33Right-handed alpha
Helix 3
3
C
26 33Right-handed alpha
Helix 4
4
D
26 33Right-handed alpha
Helix 5
5
E
26 33Right-handed alpha
Helix 6
6
F
11 13Right-handed 310
Helix 7
7
F
26 33Right-handed alpha
Helix 8
8
G
26 33Right-handed alpha
Helix 9
9
H
11 13Right-handed 310
Helix 10
10
H
26 31Right-handed alpha
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There are 12 sheets in PDB entry 3SO0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 20first strand
Strand 2
A
5 10anti-parallel
Strand 3
A
42 44anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 66first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
83 87anti-parallel
Strand 4
A
23 25anti-parallel
Strand 5
C
60 66anti-parallel
Strand 6
C
50 56anti-parallel
Strand 7
C
83 87anti-parallel
Strand 8
C
23 25anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 20first strand
Strand 2
B
5 10anti-parallel
Strand 3
B
42 44anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 66first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
83 87anti-parallel
Strand 4
B
23 25anti-parallel
Strand 5
D
60 66anti-parallel
Strand 6
D
50 56anti-parallel
Strand 7
D
83 87anti-parallel
Strand 8
D
23 25anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 20first strand
Strand 2
C
5 10anti-parallel
Strand 3
C
42 44anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 20first strand
Strand 2
D
5 10anti-parallel
Strand 3
D
42 44anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 20first strand
Strand 2
E
5 10anti-parallel
Strand 3
E
42 44anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
23 25first strand
Strand 2
E
83 87anti-parallel
Strand 3
E
50 56anti-parallel
Strand 4
E
60 66anti-parallel
Strand 5
H
23 25anti-parallel
Strand 6
H
83 87anti-parallel
Strand 7
H
50 56anti-parallel
Strand 8
H
60 66anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 20first strand
Strand 2
F
5 10anti-parallel
Strand 3
F
42 44anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
23 25first strand
Strand 2
F
83 87anti-parallel
Strand 3
F
50 56anti-parallel
Strand 4
F
60 66anti-parallel
Strand 5
G
23 25anti-parallel
Strand 6
G
83 87anti-parallel
Strand 7
G
50 54anti-parallel
Strand 8
G
63 66anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
14 20first strand
Strand 2
G
5 10anti-parallel
Strand 3
G
42 44anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 20first strand
Strand 2
H
5 10anti-parallel
Strand 3
H
42 44anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il