Analysis of interatomic Contacts of Structural Units in PDB entry:
3SO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SO5 entry

There are 14 chains in PDB entry 3SO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 496PRO 497
A
 PRO 499ILE 511
A
 GLY 513TRP 534
A
 ASP 537GLY 577
A
 TYR 579VAL 593
A
 ALA 595ALA 595
A
 LEU 597ASN 600
B
 GLY 490PRO 497
B
 PRO 499ILE 511
B
 GLY 513TRP 534
B
 ASP 537GLY 577
B
 TYR 579VAL 593
B
 ALA 595ALA 595
B
 LEU 597ASN 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3SO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
553 557Right-handed 310
Helix 2
2
A
572 576Right-handed 310
Helix 3
3
B
553 557Right-handed 310
Helix 4
4
B
572 576Right-handed 310
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There are 6 sheets in PDB entry 3SO5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 503first strand
Strand 2
A
516 524anti-parallel
Strand 3
A
560 568anti-parallel
Strand 4
A
545 551anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
595 600parallel
Strand 3
A
577 585anti-parallel
Strand 4
A
531 536anti-parallel
Strand 5
A
539 540anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
595 600parallel
Strand 3
A
577 585anti-parallel
Strand 4
A
588 591anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
500 503first strand
Strand 2
B
516 524anti-parallel
Strand 3
B
560 568anti-parallel
Strand 4
B
545 551anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
508 511first strand
Strand 2
B
595 600parallel
Strand 3
B
577 585anti-parallel
Strand 4
B
531 536anti-parallel
Strand 5
B
539 540anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
508 511first strand
Strand 2
B
595 600parallel
Strand 3
B
577 585anti-parallel
Strand 4
B
588 591anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il