Analysis of interatomic Contacts of Structural Units in PDB entry:
3SO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SO6 entry

There are 2 chains in PDB entry 3SO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 42ARG 178
Q
 SER 839THR 851
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 3SO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 80Right-handed alpha
Helix 2
2
A
149 173Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3SO6.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
45 57anti-parallel
Strand 5
A
140 146anti-parallel
Strand 6
A
127 133anti-parallel
Strand 7
A
115 120anti-parallel
Strand 8
Q
840 843anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il