Analysis of interatomic Contacts of Structural Units in PDB entry:
3SOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SOO entry

There are 30 chains in PDB entry 3SOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0SER 257
A
 GLN 259PRO 274
A
 PHE 276VAL 280
A
 LEU 282PHE 284
A
 CYS 286ILE 290
A
 THR 292ARG 300
A
 PHE 302GLN 305
A
 SER 307MSE 309
A
 GLU 311LEU 313
A
 ASP 315GLN 319
B
 GLY 0SER 257
B
 GLN 259PRO 274
B
 PHE 276VAL 280
B
 LEU 282PHE 284
B
 CYS 286ILE 290
B
 THR 292ARG 300
B
 PHE 302GLN 305
B
 SER 307MSE 309
B
 GLU 311LEU 313
B
 ASP 315GLN 319
C
 VAL 235SER 257
C
 GLN 259PRO 274
C
 PHE 276VAL 280
C
 LEU 282PHE 284
C
 CYS 286ILE 290
C
 THR 292ARG 300
C
 PHE 302GLN 305
C
 SER 307MSE 309
C
 GLU 311LEU 313
C
 ASP 315GLN 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3SOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
257 270Right-handed alpha
Helix 2
2
A
295 305Right-handed alpha
Helix 3
3
A
306 311Right-handed alpha
Helix 4
4
B
257 270Right-handed alpha
Helix 5
5
B
295 305Right-handed alpha
Helix 6
6
B
306 311Right-handed alpha
Helix 7
7
C
257 270Right-handed alpha
Helix 8
8
C
295 304Right-handed alpha
Helix 9
9
C
306 311Right-handed alpha
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There are 4 sheets in PDB entry 3SOO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 285first strand
Strand 2
A
290 293anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
C
275 285anti-parallel
Strand 3
B
275 285anti-parallel
Strand 4
B
290 293anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
C
275 285anti-parallel
Strand 3
C
290 293anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 255first strand
Strand 2
C
251 255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il