Analysis of interatomic Contacts of Structural Units in PDB entry:
3SOZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SOZ entry

There are 3 chains in PDB entry 3SOZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 245
B
 MSE 1LYS 245
C
 MSE 1LYS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 3SOZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 40Right-handed alpha
Helix 2
2
A
52 57Right-handed alpha
Helix 3
3
A
61 67Right-handed alpha
Helix 4
4
A
77 83Right-handed alpha
Helix 5
5
A
84 89Right-handed alpha
Helix 6
6
A
96 107Right-handed alpha
Helix 7
7
A
122 126Right-handed 310
Helix 8
8
A
128 132Right-handed 310
Helix 9
9
A
133 138Right-handed alpha
Helix 10
10
A
223 228Right-handed alpha
Helix 11
11
A
231 244Right-handed alpha
Helix 12
12
B
32 42Right-handed alpha
Helix 13
13
B
51 58Right-handed alpha
Helix 14
14
B
62 66Right-handed 310
Helix 15
15
B
77 83Right-handed alpha
Helix 16
16
B
84 89Right-handed alpha
Helix 17
17
B
96 107Right-handed alpha
Helix 18
18
B
122 126Right-handed 310
Helix 19
19
B
128 132Right-handed 310
Helix 20
20
B
134 138Right-handed 310
Helix 21
21
B
223 229Right-handed alpha
Helix 22
22
B
231 243Right-handed alpha
Helix 23
23
C
32 42Right-handed alpha
Helix 24
24
C
51 58Right-handed alpha
Helix 25
25
C
77 83Right-handed alpha
Helix 26
26
C
84 91Right-handed alpha
Helix 27
27
C
96 107Right-handed alpha
Helix 28
28
C
122 126Right-handed 310
Helix 29
29
C
128 137Right-handed 310
Helix 30
30
C
223 229Right-handed alpha
Helix 31
31
C
231 244Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3SOZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
2 7parallel
Strand 3
A
70 74parallel
Strand 4
A
110 114parallel
Strand 5
A
208 213parallel
Strand 6
A
197 205anti-parallel
Strand 7
A
189 194anti-parallel
Strand 8
A
148 159anti-parallel
Strand 9
A
172 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 18first strand
Strand 2
A
21 28anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
183 184anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
2 7parallel
Strand 3
B
70 74parallel
Strand 4
B
110 114parallel
Strand 5
B
208 213parallel
Strand 6
B
197 205anti-parallel
Strand 7
B
189 194anti-parallel
Strand 8
B
158 159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 18first strand
Strand 2
B
21 28anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
182 184anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 155first strand
Strand 2
B
176 180anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 50first strand
Strand 2
C
2 7parallel
Strand 3
C
70 74parallel
Strand 4
C
110 114parallel
Strand 5
C
208 213parallel
Strand 6
C
197 205anti-parallel
Strand 7
C
189 194anti-parallel
Strand 8
C
148 159anti-parallel
Strand 9
C
172 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 18first strand
Strand 2
C
21 28anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 142first strand
Strand 2
C
182 184anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il