Analysis of interatomic Contacts of Structural Units in PDB entry:
3SP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SP6 entry

There are 2 chains in PDB entry 3SP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 196TYR 468
B
 LEU 687THR 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3SP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
196 218Right-handed alpha
Helix 2
2
A
221 231Right-handed alpha
Helix 3
3
A
243 255Right-handed alpha
Helix 4
4
A
256 260Right-handed 310
Helix 5
5
A
267 293Right-handed alpha
Helix 6
6
A
296 300Right-handed 310
Helix 7
7
A
301 322Right-handed alpha
Helix 8
8
A
323 325Right-handed 310
Helix 9
9
A
341 346Right-handed alpha
Helix 10
10
A
350 354Right-handed 310
Helix 11
11
A
355 367Right-handed alpha
Helix 12
12
A
371 384Right-handed alpha
Helix 13
13
A
393 416Right-handed alpha
Helix 14
14
A
421 451Right-handed alpha
Helix 15
15
A
457 465Right-handed alpha
Helix 16
16
B
688 697Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3SP6.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
337 340parallel
Strand 3
A
329 332anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il