Analysis of interatomic Contacts of Structural Units in PDB entry:
3SRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SRV entry

There are 3 chains in PDB entry 3SRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 364ASN 524
A
 TYR 526VAL 634
B
 TYR 364ASP 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3SRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
366 368Right-handed 310
Helix 2
2
A
412 426Right-handed alpha
Helix 3
3
A
456 463Right-handed alpha
Helix 4
4
A
467 488Right-handed alpha
Helix 5
5
A
496 498Right-handed 310
Helix 6
6
A
535 539Right-handed 310
Helix 7
7
A
540 547Right-handed alpha
Helix 8
8
A
550 567Right-handed alpha
Helix 9
9
A
577 587Right-handed alpha
Helix 10
10
A
598 609Right-handed alpha
Helix 11
11
A
612 616Right-handed 310
Helix 12
12
A
618 633Right-handed alpha
Helix 13
13
B
366 368Right-handed 310
Helix 14
14
B
411 427Right-handed alpha
Helix 15
15
B
456 463Right-handed alpha
Helix 16
16
B
467 488Right-handed alpha
Helix 17
17
B
496 498Right-handed 310
Helix 18
18
B
535 539Right-handed 310
Helix 19
19
B
540 547Right-handed alpha
Helix 20
20
B
550 567Right-handed alpha
Helix 21
21
B
577 587Right-handed alpha
Helix 22
22
B
598 609Right-handed alpha
Helix 23
23
B
618 631Right-handed alpha
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There are 9 sheets in PDB entry 3SRV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 378first strand
Strand 2
A
383 392anti-parallel
Strand 3
A
395 404anti-parallel
Strand 4
A
444 449anti-parallel
Strand 5
A
435 440anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 378first strand
Strand 2
A
383 392anti-parallel
Strand 3
A
395 404anti-parallel
Strand 4
B
589 591anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 455first strand
Strand 2
A
500 504anti-parallel
Strand 3
A
507 510anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 491first strand
Strand 2
A
517 518anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 527first strand
Strand 2
A
548 549anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 380first strand
Strand 2
B
383 392anti-parallel
Strand 3
B
395 403anti-parallel
Strand 4
B
444 449anti-parallel
Strand 5
B
435 440anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 455first strand
Strand 2
B
500 504anti-parallel
Strand 3
B
507 510anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
490 491first strand
Strand 2
B
517 518anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 527first strand
Strand 2
B
548 549anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il