Analysis of interatomic Contacts of Structural Units in PDB entry:
3SS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SS5 entry

There are 4 chains in PDB entry 3SS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 144ARG 549
B
 LEU 144ARG 549
C
 LEU 144GLU 550
D
 LEU 144ARG 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 3SS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
144 152Right-handed alpha
Helix 2
2
A
161 170Right-handed alpha
Helix 3
3
A
177 179Right-handed 310
Helix 4
4
A
180 193Right-handed alpha
Helix 5
5
A
201 210Right-handed alpha
Helix 6
6
A
212 221Right-handed alpha
Helix 7
7
A
228 244Right-handed alpha
Helix 8
8
A
255 261Right-handed alpha
Helix 9
9
A
292 311Right-handed alpha
Helix 10
10
A
339 350Right-handed alpha
Helix 11
11
A
355 371Right-handed alpha
Helix 12
12
A
379 389Right-handed alpha
Helix 13
13
A
390 403Right-handed alpha
Helix 14
14
A
411 424Right-handed alpha
Helix 15
15
A
428 441Right-handed alpha
Helix 16
16
A
454 469Right-handed alpha
Helix 17
17
A
470 472Right-handed 310
Helix 18
18
A
473 481Right-handed alpha
Helix 19
19
A
516 530Right-handed alpha
Helix 20
20
B
144 151Right-handed alpha
Helix 21
21
B
161 171Right-handed alpha
Helix 22
22
B
177 179Right-handed 310
Helix 23
23
B
180 189Right-handed alpha
Helix 24
24
B
201 210Right-handed alpha
Helix 25
25
B
212 221Right-handed alpha
Helix 26
26
B
228 244Right-handed alpha
Helix 27
27
B
255 261Right-handed alpha
Helix 28
28
B
292 306Right-handed alpha
Helix 29
29
B
306 311Right-handed alpha
Helix 30
30
B
339 350Right-handed alpha
Helix 31
31
B
355 371Right-handed alpha
Helix 32
32
B
379 389Right-handed alpha
Helix 33
33
B
390 404Right-handed alpha
Helix 34
34
B
411 424Right-handed alpha
Helix 35
35
B
428 441Right-handed alpha
Helix 36
36
B
454 469Right-handed alpha
Helix 37
37
B
470 472Right-handed 310
Helix 38
38
B
473 481Right-handed alpha
Helix 39
39
B
516 530Right-handed alpha
Helix 40
40
C
144 152Right-handed alpha
Helix 41
41
C
161 171Right-handed alpha
Helix 42
42
C
177 179Right-handed 310
Helix 43
43
C
180 194Right-handed alpha
Helix 44
44
C
201 210Right-handed alpha
Helix 45
45
C
212 221Right-handed alpha
Helix 46
46
C
228 244Right-handed alpha
Helix 47
47
C
255 260Right-handed alpha
Helix 48
48
C
290 292Right-handed 310
Helix 49
49
C
293 311Right-handed alpha
Helix 50
50
C
339 350Right-handed alpha
Helix 51
51
C
355 371Right-handed alpha
Helix 52
52
C
379 389Right-handed alpha
Helix 53
53
C
390 403Right-handed alpha
Helix 54
54
C
411 424Right-handed alpha
Helix 55
55
C
428 441Right-handed alpha
Helix 56
56
C
454 469Right-handed alpha
Helix 57
57
C
470 472Right-handed 310
Helix 58
58
C
473 481Right-handed alpha
Helix 59
59
C
516 530Right-handed alpha
Helix 60
60
D
144 152Right-handed alpha
Helix 61
61
D
161 171Right-handed alpha
Helix 62
62
D
177 179Right-handed 310
Helix 63
63
D
180 191Right-handed alpha
Helix 64
64
D
201 210Right-handed alpha
Helix 65
65
D
212 221Right-handed alpha
Helix 66
66
D
228 245Right-handed alpha
Helix 67
67
D
255 260Right-handed alpha
Helix 68
68
D
292 305Right-handed alpha
Helix 69
69
D
306 311Right-handed alpha
Helix 70
70
D
339 350Right-handed alpha
Helix 71
71
D
355 371Right-handed alpha
Helix 72
72
D
379 389Right-handed alpha
Helix 73
73
D
390 403Right-handed alpha
Helix 74
74
D
411 424Right-handed alpha
Helix 75
75
D
428 441Right-handed alpha
Helix 76
76
D
454 469Right-handed alpha
Helix 77
77
D
470 472Right-handed 310
Helix 78
78
D
473 481Right-handed alpha
Helix 79
79
D
516 530Right-handed alpha
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There are 13 sheets in PDB entry 3SS5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
199 200anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 281first strand
Strand 2
A
267 272anti-parallel
Strand 3
A
501 506anti-parallel
Strand 4
A
492 497anti-parallel
Strand 5
A
485 487anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
425 427anti-parallel
Strand 3
A
376 378anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
199 200anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 281first strand
Strand 2
B
267 272anti-parallel
Strand 3
B
501 506anti-parallel
Strand 4
B
492 497anti-parallel
Strand 5
B
485 487anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 288first strand
Strand 2
B
425 427anti-parallel
Strand 3
B
377 378anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 160first strand
Strand 2
C
199 200anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 251first strand
Strand 2
C
509 510anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
277 281first strand
Strand 2
C
267 272anti-parallel
Strand 3
C
501 506anti-parallel
Strand 4
C
492 497anti-parallel
Strand 5
C
485 487anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
287 288first strand
Strand 2
C
425 427anti-parallel
Strand 3
C
377 378anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 160first strand
Strand 2
D
199 200anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
277 281first strand
Strand 2
D
267 272anti-parallel
Strand 3
D
501 506anti-parallel
Strand 4
D
492 497anti-parallel
Strand 5
D
485 487anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
287 288first strand
Strand 2
D
425 427anti-parallel
Strand 3
D
377 378anti-parallel
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