Analysis of interatomic Contacts of Structural Units in PDB entry:
3SV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SV1 entry

There are 6 chains in PDB entry 3SV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 363GLU 552
B
 GLY 363ALA 531
C
 GLY 363SER 540
D
 GLN 754GLN 767
E
 ASN 755PHE 765
F
 GLY 756GLU 758
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3SV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
365 370Right-handed alpha
Helix 2
2
A
392 418Right-handed alpha
Helix 3
3
A
509 531Right-handed alpha
Helix 4
4
A
538 542Right-handed 310
Helix 5
5
A
548 552Right-handed 310
Helix 6
6
B
365 370Right-handed alpha
Helix 7
7
B
390 415Right-handed alpha
Helix 8
8
B
509 530Right-handed alpha
Helix 9
9
C
365 370Right-handed alpha
Helix 10
10
C
390 416Right-handed alpha
Helix 11
11
C
509 526Right-handed alpha
Helix 12
12
D
761 766Right-handed alpha
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There are 5 sheets in PDB entry 3SV1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 454first strand
Strand 2
A
438 443anti-parallel
Strand 3
A
428 434anti-parallel
Strand 4
A
371 384anti-parallel
Strand 5
A
499 506anti-parallel
Strand 6
A
467 473anti-parallel
Strand 7
A
458 462anti-parallel
Strand 8
D
756 758anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 377first strand
Strand 2
B
428 434anti-parallel
Strand 3
B
438 443anti-parallel
Strand 4
B
449 454anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
499 506anti-parallel
Strand 3
B
467 473anti-parallel
Strand 4
B
463 464anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
382 385first strand
Strand 2
C
498 506anti-parallel
Strand 3
C
371 379anti-parallel
Strand 4
C
428 434anti-parallel
Strand 5
C
438 443anti-parallel
Strand 6
C
449 454anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
382 385first strand
Strand 2
C
498 506anti-parallel
Strand 3
C
467 472anti-parallel
Strand 4
C
458 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il