Analysis of interatomic Contacts of Structural Units in PDB entry:
3SVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SVL entry

There are 2 chains in PDB entry 3SVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLN 184
B
 LYS 4ARG 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3SVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 27Right-handed alpha
Helix 2
2
A
28 30Right-handed 310
Helix 3
3
A
50 57Right-handed alpha
Helix 4
4
A
60 73Right-handed alpha
Helix 5
5
A
88 100Right-handed alpha
Helix 6
6
A
123 137Right-handed alpha
Helix 7
7
A
151 154Right-handed 310
Helix 8
8
A
165 183Right-handed alpha
Helix 9
9
B
18 31Right-handed alpha
Helix 10
10
B
50 57Right-handed alpha
Helix 11
11
B
60 73Right-handed alpha
Helix 12
12
B
88 99Right-handed alpha
Helix 13
13
B
123 137Right-handed alpha
Helix 14
14
B
151 154Right-handed 310
Helix 15
15
B
165 184Right-handed alpha
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There are 6 sheets in PDB entry 3SVL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
5 11parallel
Strand 3
A
75 80parallel
Strand 4
A
110 116parallel
Strand 5
A
140 141parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
5 11parallel
Strand 3
A
75 80parallel
Strand 4
A
110 116parallel
Strand 5
A
147 149parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
162 163anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 39first strand
Strand 2
B
5 11parallel
Strand 3
B
75 80parallel
Strand 4
B
110 116parallel
Strand 5
B
140 141parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 39first strand
Strand 2
B
5 11parallel
Strand 3
B
75 80parallel
Strand 4
B
110 116parallel
Strand 5
B
147 149parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
162 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il