Analysis of interatomic Contacts of Structural Units in PDB entry:
3SVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SVT entry

There are 2 chains in PDB entry 3SVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4VAL 277
B
 LEU 3VAL 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3SVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
40 53Right-handed alpha
Helix 3
3
A
70 86Right-handed alpha
Helix 4
4
A
103 107Right-handed 310
Helix 5
5
A
108 137Right-handed alpha
Helix 6
6
A
147 152Right-handed alpha
Helix 7
7
A
158 179Right-handed alpha
Helix 8
8
A
195 197Right-handed 310
Helix 9
9
A
198 203Right-handed alpha
Helix 10
10
A
204 215Right-handed alpha
Helix 11
11
A
222 235Right-handed alpha
Helix 12
12
A
236 239Right-handed 310
Helix 13
13
A
251 255Right-handed 310
Helix 14
14
A
260 269Right-handed alpha
Helix 15
15
A
271 275Right-handed 310
Helix 16
16
B
17 30Right-handed alpha
Helix 17
17
B
40 54Right-handed alpha
Helix 18
18
B
70 86Right-handed alpha
Helix 19
19
B
103 107Right-handed 310
Helix 20
20
B
108 137Right-handed alpha
Helix 21
21
B
147 152Right-handed alpha
Helix 22
22
B
158 179Right-handed alpha
Helix 23
23
B
195 197Right-handed 310
Helix 24
24
B
198 204Right-handed alpha
Helix 25
25
B
204 215Right-handed alpha
Helix 26
26
B
223 235Right-handed alpha
Helix 27
27
B
236 239Right-handed 310
Helix 28
28
B
251 255Right-handed 310
Helix 29
29
B
260 269Right-handed alpha
Helix 30
30
B
271 275Right-handed 310
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There are 3 sheets in PDB entry 3SVT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
33 38parallel
Strand 3
A
9 13parallel
Strand 4
A
90 93parallel
Strand 5
A
140 145parallel
Strand 6
A
183 190parallel
Strand 7
A
245 248parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
B
33 38parallel
Strand 3
B
9 13parallel
Strand 4
B
90 93parallel
Strand 5
B
140 145parallel
Strand 6
B
183 190parallel
Strand 7
B
245 248parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
221 222parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il