Analysis of interatomic Contacts of Structural Units in PDB entry:
3SWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SWJ entry

There is 1 chain in PDB entry 3SWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2HIS 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 3SWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
15 26Right-handed alpha
Helix 3
3
A
66 79Right-handed alpha
Helix 4
4
A
85 97Right-handed alpha
Helix 5
5
A
135 143Right-handed alpha
Helix 6
6
A
179 194Right-handed alpha
Helix 7
7
A
198 204Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3SWJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
54 57anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
226 230anti-parallel
Strand 3
A
208 223anti-parallel
Strand 4
A
166 175anti-parallel
Strand 5
A
147 152anti-parallel
Strand 6
A
100 106anti-parallel
Strand 7
A
112 122anti-parallel
Strand 8
A
125 131anti-parallel
Strand 9
A
208 223anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il