Analysis of interatomic Contacts of Structural Units in PDB entry:
3SY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SY8 entry

There are 4 chains in PDB entry 3SY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 392
B
 MET 1SER 392
C
 ASN 2SER 392
D
 ASP 3ALA 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 3SY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 27Right-handed alpha
Helix 2
2
A
36 48Right-handed alpha
Helix 3
3
A
63 75Right-handed alpha
Helix 4
4
A
87 89Right-handed 310
Helix 5
5
A
90 100Right-handed alpha
Helix 6
6
A
114 129Right-handed alpha
Helix 7
7
A
143 153Right-handed alpha
Helix 8
8
A
189 192Right-handed 310
Helix 9
9
A
193 200Right-handed alpha
Helix 10
10
A
202 224Right-handed alpha
Helix 11
11
A
235 240Right-handed 310
Helix 12
12
A
243 255Right-handed alpha
Helix 13
13
A
258 260Right-handed 310
Helix 14
14
A
268 273Right-handed alpha
Helix 15
15
A
275 289Right-handed alpha
Helix 16
16
A
301 306Right-handed 310
Helix 17
17
A
319 328Right-handed alpha
Helix 18
18
A
330 346Right-handed alpha
Helix 19
19
A
356 367Right-handed alpha
Helix 20
20
A
381 392Right-handed alpha
Helix 21
21
B
12 27Right-handed alpha
Helix 22
22
B
36 47Right-handed alpha
Helix 23
23
B
63 75Right-handed alpha
Helix 24
24
B
87 89Right-handed 310
Helix 25
25
B
90 100Right-handed alpha
Helix 26
26
B
114 129Right-handed alpha
Helix 27
27
B
143 151Right-handed alpha
Helix 28
28
B
189 192Right-handed 310
Helix 29
29
B
193 200Right-handed alpha
Helix 30
30
B
202 224Right-handed alpha
Helix 31
31
B
235 241Right-handed 310
Helix 32
32
B
243 255Right-handed alpha
Helix 33
33
B
258 260Right-handed 310
Helix 34
34
B
268 273Right-handed alpha
Helix 35
35
B
275 289Right-handed alpha
Helix 36
36
B
301 306Right-handed 310
Helix 37
37
B
319 328Right-handed alpha
Helix 38
38
B
330 346Right-handed alpha
Helix 39
39
B
356 367Right-handed alpha
Helix 40
40
B
381 389Right-handed alpha
Helix 41
41
C
12 27Right-handed alpha
Helix 42
42
C
36 46Right-handed alpha
Helix 43
43
C
56 74Right-handed alpha
Helix 44
44
C
87 89Right-handed 310
Helix 45
45
C
90 100Right-handed alpha
Helix 46
46
C
114 127Right-handed alpha
Helix 47
47
C
143 152Right-handed alpha
Helix 48
48
C
189 192Right-handed 310
Helix 49
49
C
193 201Right-handed alpha
Helix 50
50
C
202 224Right-handed alpha
Helix 51
51
C
235 240Right-handed alpha
Helix 52
52
C
243 255Right-handed alpha
Helix 53
53
C
258 260Right-handed 310
Helix 54
54
C
268 273Right-handed alpha
Helix 55
55
C
277 289Right-handed alpha
Helix 56
56
C
302 310Right-handed alpha
Helix 57
57
C
319 325Right-handed alpha
Helix 58
58
C
328 346Right-handed alpha
Helix 59
59
C
356 367Right-handed alpha
Helix 60
60
C
382 390Right-handed alpha
Helix 61
61
D
17 22Right-handed alpha
Helix 62
62
D
36 43Right-handed alpha
Helix 63
63
D
66 75Right-handed alpha
Helix 64
64
D
87 89Right-handed 310
Helix 65
65
D
90 100Right-handed alpha
Helix 66
66
D
116 123Right-handed alpha
Helix 67
67
D
123 128Right-handed alpha
Helix 68
68
D
143 153Right-handed alpha
Helix 69
69
D
189 192Right-handed 310
Helix 70
70
D
193 200Right-handed alpha
Helix 71
71
D
202 224Right-handed alpha
Helix 72
72
D
235 241Right-handed 310
Helix 73
73
D
243 255Right-handed alpha
Helix 74
74
D
258 260Right-handed 310
Helix 75
75
D
268 273Right-handed alpha
Helix 76
76
D
277 289Right-handed alpha
Helix 77
77
D
302 310Right-handed alpha
Helix 78
78
D
319 324Right-handed alpha
Helix 79
79
D
328 345Right-handed alpha
Helix 80
80
D
356 367Right-handed alpha
Helix 81
81
D
382 397Right-handed alpha
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There are 9 sheets in PDB entry 3SY8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
4 9parallel
Strand 3
A
50 55parallel
Strand 4
A
77 82parallel
Strand 5
A
104 108parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
171 182anti-parallel
Strand 3
A
229 233parallel
Strand 4
A
262 267parallel
Strand 5
A
291 297parallel
Strand 6
A
314 317parallel
Strand 7
A
348 351parallel
Strand 8
A
370 371parallel
Strand 9
A
156 165anti-parallel
Strand 10
A
171 182anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 34first strand
Strand 2
B
4 9parallel
Strand 3
B
50 55parallel
Strand 4
B
77 82parallel
Strand 5
B
104 108parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
171 182anti-parallel
Strand 3
B
229 233parallel
Strand 4
B
262 267parallel
Strand 5
B
291 297parallel
Strand 6
B
314 317parallel
Strand 7
B
348 352parallel
Strand 8
B
370 372parallel
Strand 9
B
156 165anti-parallel
Strand 10
B
171 182anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 34first strand
Strand 2
C
4 9parallel
Strand 3
C
50 55parallel
Strand 4
C
77 82parallel
Strand 5
C
104 108parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
380 381first strand
Strand 2
C
156 165anti-parallel
Strand 3
C
370 371anti-parallel
Strand 4
C
348 351parallel
Strand 5
C
314 317parallel
Strand 6
C
291 295parallel
Strand 7
C
262 267parallel
Strand 8
C
229 233parallel
Strand 9
C
173 180parallel
Strand 10
C
156 165anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 8first strand
Strand 2
D
52 55parallel
Strand 3
D
79 82parallel
Strand 4
D
104 107parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
186 188first strand
Strand 2
D
173 182anti-parallel
Strand 3
D
156 165anti-parallel
Strand 4
D
380 381anti-parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
186 188first strand
Strand 2
D
173 182anti-parallel
Strand 3
D
229 233parallel
Strand 4
D
262 267parallel
Strand 5
D
291 295parallel
Strand 6
D
314 317parallel
Strand 7
D
348 351parallel
Strand 8
D
370 371parallel
Strand 9
D
156 165anti-parallel
Strand 10
D
380 381anti-parallel
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