Analysis of interatomic Contacts of Structural Units in PDB entry:
3SYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SYJ entry

There is 1 chain in PDB entry 3SYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26PRO 976
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3SYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 43Right-handed alpha
Helix 2
2
A
75 79Right-handed 310
Helix 3
3
A
113 117Right-handed 310
Helix 4
4
A
163 169Right-handed 310
Helix 5
5
A
280 292Right-handed alpha
Helix 6
6
A
346 350Right-handed 310
Helix 7
7
A
356 361Right-handed alpha
Helix 8
8
A
492 494Right-handed 310
Helix 9
9
A
554 559Right-handed 310
Helix 10
10
A
627 635Right-handed alpha
Helix 11
11
A
716 723Right-handed alpha
Helix 12
12
A
846 850Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 3SYJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
184 187parallel
Strand 3
A
193 197anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
63 67anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
92 94anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
121 125anti-parallel
Strand 3
A
145 146anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
176 180anti-parallel
Strand 3
A
246 251anti-parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
274 278anti-parallel
Strand 6
A
218 221anti-parallel
Strand 7
A
211 215anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 297first strand
Strand 2
A
365 368parallel
Strand 3
A
388 391parallel
Strand 4
A
409 411parallel
Strand 5
A
428 432parallel
Strand 6
A
448 458parallel
Strand 7
A
436 439parallel
Strand 8
A
416 419parallel
Strand 9
A
394 398parallel
Strand 10
A
373 377parallel
Strand 11
A
304 310parallel
Strand 12
A
312 319anti-parallel
Strand 13
A
326 333anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 297first strand
Strand 2
A
365 368parallel
Strand 3
A
388 391parallel
Strand 4
A
409 411parallel
Strand 5
A
428 432parallel
Strand 6
A
448 458parallel
Strand 7
A
474 485parallel
Strand 8
A
496 498parallel
Strand 9
A
518 519parallel
Back to list of sheets
Back to top of page

There are 19 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 333first strand
Strand 2
A
312 319anti-parallel
Strand 3
A
304 310anti-parallel
Strand 4
A
373 377parallel
Strand 5
A
394 398parallel
Strand 6
A
416 419parallel
Strand 7
A
436 439parallel
Strand 8
A
448 458parallel
Strand 9
A
474 485parallel
Strand 10
A
503 506parallel
Strand 11
A
524 527parallel
Strand 12
A
567 568parallel
Strand 13
A
598 600parallel
Strand 14
A
650 659parallel
Strand 15
A
670 679parallel
Strand 16
A
726 729parallel
Strand 17
A
746 748parallel
Strand 18
A
767 769parallel
Strand 19
A
786 788parallel
Back to list of sheets
Back to top of page

There are 11 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 514first strand
Strand 2
A
535 539parallel
Strand 3
A
580 584parallel
Strand 4
A
604 607parallel
Strand 5
A
650 659parallel
Strand 6
A
670 679parallel
Strand 7
A
732 734parallel
Strand 8
A
752 754parallel
Strand 9
A
772 774parallel
Strand 10
A
791 793parallel
Strand 11
A
810 812parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
354 355anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
404 405parallel
Back to list of sheets
Back to top of page

There are 13 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 564first strand
Strand 2
A
592 595parallel
Strand 3
A
611 614parallel
Strand 4
A
663 666parallel
Strand 5
A
684 687parallel
Strand 6
A
739 743parallel
Strand 7
A
759 763parallel
Strand 8
A
779 783parallel
Strand 9
A
798 802parallel
Strand 10
A
817 821parallel
Strand 11
A
835 844parallel
Strand 12
A
884 895parallel
Strand 13
A
900 901anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 806first strand
Strand 2
A
824 826parallel
Strand 3
A
835 844parallel
Strand 4
A
884 895parallel
Strand 5
A
912 920parallel
Strand 6
A
946 950parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 618first strand
Strand 2
A
647 648anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
694 700first strand
Strand 2
A
707 713anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 833first strand
Strand 2
A
877 880parallel
Strand 3
A
903 906parallel
Strand 4
A
931 936parallel
Strand 5
A
970 974anti-parallel
Strand 6
A
960 967anti-parallel
Strand 7
A
955 957anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il